View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21263_low_20 (Length: 232)

Name: NF21263_low_20
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21263_low_20
NF21263_low_20
[»] chr4 (3 HSPs)
chr4 (1-88)||(962694-962781)
chr4 (123-196)||(962816-962889)
chr4 (140-184)||(48727580-48727624)
[»] chr1 (1 HSPs)
chr1 (139-185)||(33998717-33998763)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 962694 - 962781
Alignment:
Q  1 ttgggtgatcctatatgcagaattcgtcactttcaattacatgttatgctggtaattactatatcttatcttattatactcataactg 88  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  962694 ttgggtgatcctatatgtagaattcgtcactttcaattacatgttatgctggtaattactatatcttatcttattatactcataactg 962781  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 962816 - 962889
Alignment:
Q  123 aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaaga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  962816 aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaaga 962889  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 48727624 - 48727580
Alignment:
Q  140 agaaattattataaaataaagtgacagtaatgactattttacaac 184  Q
    |||||||||||| || |||||||||| ||||||||||||||||||    
T  48727624 agaaattattatgaactaaagtgacattaatgactattttacaac 48727580  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 33998717 - 33998763
Alignment:
Q  139 gagaaattattataaaataaagtgacagtaatgactattttacaact 185  Q
    ||||||||| ||| || |||||||||| |||||||||||||||||||    
T  33998717 gagaaattactattaattaaagtgacattaatgactattttacaact 33998763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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