View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21263_low_22 (Length: 221)

Name: NF21263_low_22
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21263_low_22
NF21263_low_22
[»] chr2 (4 HSPs)
chr2 (17-98)||(45038824-45038905)
chr2 (20-98)||(45064452-45064529)
chr2 (17-88)||(45083710-45083781)
chr2 (162-203)||(45038719-45038760)
[»] chr8 (1 HSPs)
chr8 (17-94)||(29375464-29375541)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 45038905 - 45038824
Alignment:
Q  17 ttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45038905 ttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc 45038824  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 45064529 - 45064452
Alignment:
Q  20 ctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc 98  Q
    |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||    
T  45064529 ctaagaacgaataatttgtaaaacaataactaatcaagtggtagtttttatagatagt-gatgagttcatacaatgatc 45064452  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 45083710 - 45083781
Alignment:
Q  17 ttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttca 88  Q
    |||||||||| || | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  45083710 ttcctaagaatgaataatttgtaaaacaataattaatcaagtggtggtttttatagttagtggaggagttca 45083781  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 45038760 - 45038719
Alignment:
Q  162 gacttgttgtttgtactaccaaatcataagaccaattgcccc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45038760 gacttgttgtttgtactaccaaatcataagaccaattgcccc 45038719  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 29375541 - 29375464
Alignment:
Q  17 ttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttcatacaat 94  Q
    ||||||||| | ||||||||||||||  |||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  29375541 ttcctaagagcaattcatttgtaaaatcataattaatcaagtgtcagtttttatagttagaggaggagttcatacaat 29375464  T

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