View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21263_low_3 (Length: 762)
Name: NF21263_low_3
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 12 - 743
Target Start/End: Complemental strand, 3702707 - 3701976
Alignment:
| Q |
12 |
catcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702707 |
catcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaa |
3702608 |
T |
|
| Q |
112 |
atcttgaagcttcacttcagtccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702607 |
atcttgaagcttcacttcagtccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttt |
3702508 |
T |
|
| Q |
212 |
tcattgaaaccatgttgtgtccaagtaagattttgttgagtataaggtactaaaacccaatccattaaaggataccctgaactaccaacaatccaaacac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702507 |
tcattgaaaccatgttgtgtccaagtaagattttgttgagtataaggtactaaaacccaatccattaaaggataccctgaactaccaacaatccaaacac |
3702408 |
T |
|
| Q |
312 |
ctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaaccaatacaaacatcagt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702407 |
ctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaaccaatacaaacatcagt |
3702308 |
T |
|
| Q |
412 |
gaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaaataatcagcaacacta |
511 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3702307 |
gaaaacaccatttgtatcaacaacaccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtcttctgttaaaataatcagcaacacta |
3702208 |
T |
|
| Q |
512 |
atcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcatttttagtttttctcaaag |
611 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
3702207 |
atcttaggagctatgattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcattcttaatttttctcaaag |
3702108 |
T |
|
| Q |
612 |
aagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaagttgatatacctaaacc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702107 |
aagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaagttgatatacctaaacc |
3702008 |
T |
|
| Q |
712 |
aaacctttttgaaacaatgctaagaggatcac |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3702007 |
aaacctttttgaaacaatgctaagaggatcac |
3701976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 12 - 743
Target Start/End: Complemental strand, 3699019 - 3698288
Alignment:
| Q |
12 |
catcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
3699019 |
catcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaa |
3698920 |
T |
|
| Q |
112 |
atcttgaagcttcacttcagtccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttc |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698919 |
atcttgtagcttcacttcagtccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttc |
3698820 |
T |
|
| Q |
212 |
tcattgaaaccatgttgtgtccaagtaagattttgttgagtataaggtactaaaacccaatccattaaaggataccctgaactaccaacaatccaaacac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3698819 |
tcattgaaaccatgttgtgtccaagtaagattttgttgagtataaggtactaaaacccaatccattaaaggataccctgaacttccaacaatccaaacac |
3698720 |
T |
|
| Q |
312 |
ctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaaccaatacaaacatcagt |
411 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3698719 |
ctttaagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaaccaatgcaaacatcagt |
3698620 |
T |
|
| Q |
412 |
gaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaaataatcagcaacacta |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3698619 |
gaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaaataagcagcaacacta |
3698520 |
T |
|
| Q |
512 |
atcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcatttttagtttttctcaaag |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3698519 |
atcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcatttttaatttttctcaaag |
3698420 |
T |
|
| Q |
612 |
aagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaagttgatatacctaaacc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698419 |
aagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaagttgatatacctaaacc |
3698320 |
T |
|
| Q |
712 |
aaacctttttgaaacaatgctaagaggatcac |
743 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
3698319 |
aaacctttttgaaacaattctaagaggatcac |
3698288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 17602894 - 17602680
Alignment:
| Q |
62 |
atctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaacaagaccacctacctt |
161 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||| ||| ||||||| |||||||| | ||| | |||||||||||||| |||||| ||||||||||| |
|
|
| T |
17602894 |
atctcacaaatattatgaagcacacaacaagcaccaagaacaacaggtaaatcttgcaacttaatttcagtccttttcttcaaacacccccacctacctt |
17602795 |
T |
|
| Q |
162 |
tcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttctcattgaaaccatgttgtgtccaagtaagattttgttgagtataaggtac |
261 |
Q |
| |
|
|||| ||| ||| ||||||||| ||| ||| | || |||||||| ||||||| || |||||||||||||| || |||||||| || |||| || || |
|
|
| T |
17602794 |
tcaacctactaaaagcatctttaccaattttctcaatttcaccaattctctcattaaatccatgttgtgtccacgtcagattttggtgcttatatggcac |
17602695 |
T |
|
| Q |
262 |
taaaacccaatccat |
276 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17602694 |
taaaacccaatccat |
17602680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 17602581 - 17602503
Alignment:
| Q |
378 |
gcattgaaccaggccaaccaatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaata |
456 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||||| || ||| || || ||||||||||||| |||||| |
|
|
| T |
17602581 |
gcattgagccaggccaacctatacacacatcagtaaaaacacctttactatttaccacaccttgaacagttactgaata |
17602503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 52250765 - 52250869
Alignment:
| Q |
60 |
tcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaacaagaccacctacc |
159 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||| || ||||||| || | || |||||| || |||| |||||||||||||||||||| || |
|
|
| T |
52250765 |
tcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcc |
52250864 |
T |
|
| Q |
160 |
tttca |
164 |
Q |
| |
|
||||| |
|
|
| T |
52250865 |
tttca |
52250869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 52262407 - 52262535
Alignment:
| Q |
60 |
tcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaacaagaccacctac |
158 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | || || ||||||||| | || ||||| || ||||| || |||||||| |||||||| | |
|
|
| T |
52262407 |
tcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggaccacctcc |
52262505 |
T |
|
| Q |
159 |
ctttcaatctagcaaatgcatctttagcaa |
188 |
Q |
| |
|
|||||| || ||||||||||||||||||| |
|
|
| T |
52262506 |
ctttcagccttgcaaatgcatctttagcaa |
52262535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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