View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_low_4 (Length: 634)
Name: NF21263_low_4
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 381 - 625
Target Start/End: Complemental strand, 16003858 - 16003614
Alignment:
| Q |
381 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
480 |
Q |
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| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
16003759 |
T |
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| Q |
481 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003758 |
tccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
16003659 |
T |
|
| Q |
581 |
attttcctccacaagtcgagtcataccgctatttctgtgctcctc |
625 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16003658 |
attttcctccacaagtcgagtcataccgctatttctgtgttcctc |
16003614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 381 - 625
Target Start/End: Complemental strand, 26795241 - 26794994
Alignment:
| Q |
381 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgca |
477 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgca |
26795142 |
T |
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| Q |
478 |
agatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggt |
577 |
Q |
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| T |
26795141 |
agatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagt |
26795042 |
T |
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| Q |
578 |
tccattttcctccacaagtcgagtcataccgctatttctgtgctcctc |
625 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
26795041 |
tccgttttcctccacaagtcgagtcataccgctatttatgtgttcctc |
26794994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16004874 - 16004683
Alignment:
| Q |
1 |
ataggtgaaatccattactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcg |
100 |
Q |
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| T |
16004874 |
ataggtgaaatccactactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcg |
16004775 |
T |
|
| Q |
101 |
ggtgcccggggaacacacctcctgctgccgttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
192 |
Q |
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| T |
16004774 |
ggtgccctgggaacacacctcctgccgccgttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
16004683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 188 - 383
Target Start/End: Complemental strand, 16004601 - 16004408
Alignment:
| Q |
188 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataagaattttcatgtacgcaacataagtacatagcataaaatgtc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
16004601 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataaaaattttcatgtacacaacataagtacataacataaaatgtc |
16004502 |
T |
|
| Q |
288 |
ttcttctttttcctttcnnnnnnnnnnnnnnntaacatttcttcttaacaaacctttctacaaactgcgcacataagagaaggaaagtgtctgcaa |
383 |
Q |
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||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
16004501 |
ttcttctttttcctttcaaaaaaattaaaaaataacatgtcttcttgacaaacctttctacaaact--gcacataaaagaagaaaagtgtctgcaa |
16004408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 381 - 615
Target Start/End: Complemental strand, 40722202 - 40721968
Alignment:
| Q |
381 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaaga |
40722103 |
T |
|
| Q |
481 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40722102 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttc |
40722003 |
T |
|
| Q |
581 |
attttcctccacaagtcgagtcataccgctatttc |
615 |
Q |
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|||||| | ||||||||||||||||||||||||| |
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| T |
40722002 |
gttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 381 - 564
Target Start/End: Original strand, 27221880 - 27222063
Alignment:
| Q |
381 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
480 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatatggttctgttcttgcaaga |
27221979 |
T |
|
| Q |
481 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
564 |
Q |
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| T |
27221980 |
tccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
27222063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 48819027 - 48818849
Alignment:
| Q |
16 |
tactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgcccggggaaca |
115 |
Q |
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||||||||||||||| | | | ||||||| |||||||||||||||||||| | ||||||||| |||||||| |||||||| || || || |||||||||| |
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| T |
48819027 |
tactattgtcgtcatgccgctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatgtccggggaaca |
48818928 |
T |
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| Q |
116 |
cacctcctgctgc------cgttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaat |
188 |
Q |
| |
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||||||||||||| | |||| ||||||||| | || |||| |||||||||||||||||||||||| ||||||| |
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| T |
48818927 |
cacctcctgctgctgcctttgctgctgccaactacactgaacctcatttcatgaaatatttgaatgttacaacttaaat |
48818849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 565 - 618
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
565 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgt |
618 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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