View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_low_5 (Length: 572)
Name: NF21263_low_5
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 123 - 364
Target Start/End: Original strand, 962816 - 963056
Alignment:
| Q |
123 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagatatttgaannnnnnnncttactgcga |
222 |
Q |
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| T |
962816 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagagatttgaattttttttcttactgcga |
962915 |
T |
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| Q |
223 |
gctaatatctcgttgacacattatcttgaagttgaatcatataacnnnnnnnngattatattaacatataaatgtgtagactaagagttgacacactata |
322 |
Q |
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| T |
962916 |
gctaatatctcatagacacattatcttgaagttgaatcatataacaaaaaaa-gattatattaacatataaatgtgtagactaagagttgacacactata |
963014 |
T |
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| Q |
323 |
ttgatgtatacctaatgcgacattatgttttagtgttgaata |
364 |
Q |
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| T |
963015 |
ttgatgtatatctaatgcgacattatgttttagtgttgaata |
963056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 373 - 563
Target Start/End: Original strand, 963146 - 963335
Alignment:
| Q |
373 |
agtagtttcacagtttgatatatggactgatcaaggtaatatttgttccaaacaggttgcagaatatggagaagaaggagaagttgttggagtgataagg |
472 |
Q |
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| T |
963146 |
agtagtttcacagtttgatat-tggactaatcaatgtaatatttgttccaaacaggttgcagaatatgaagaagaaggagaagttgctggagtgataagg |
963244 |
T |
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| Q |
473 |
ggttgtgtgaaaacagttacaagagggaattcagcttatgtaaaactagcttatgttttaggacttagagtctctcccaaacacaggttct |
563 |
Q |
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| T |
963245 |
ggttgtgtgaaaacagttacaagagggaattcagcttatgtaaaactagcttatgttttaggacttagagtctctcccaaacacaggttct |
963335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 962694 - 962781
Alignment:
| Q |
1 |
ttgggtgatcctatatgcagaattcgtcactttcaattacatgttatgctggtaattactatatcttatcttattatactcataactg |
88 |
Q |
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| T |
962694 |
ttgggtgatcctatatgtagaattcgtcactttcaattacatgttatgctggtaattactatatcttatcttattatactcataactg |
962781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 48727624 - 48727580
Alignment:
| Q |
140 |
agaaattattataaaataaagtgacagtaatgactattttacaac |
184 |
Q |
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| T |
48727624 |
agaaattattatgaactaaagtgacattaatgactattttacaac |
48727580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 33998717 - 33998763
Alignment:
| Q |
139 |
gagaaattattataaaataaagtgacagtaatgactattttacaact |
185 |
Q |
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| T |
33998717 |
gagaaattactattaattaaagtgacattaatgactattttacaact |
33998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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