View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_low_9 (Length: 343)
Name: NF21263_low_9
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_low_9 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 3172714 - 3172400
Alignment:
| Q |
20 |
aagtcgttctgtgattcaattggaaaattgaggcatttaagatatcttaacttatggtactgtgaaggagggagaagtcttttgaaatctgtaagtaata |
119 |
Q |
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| T |
3172714 |
aagtcgttctgtgattcaattggaaaattgaggcatttaagatatcttaatttatggtactgcgaaggagggagaagtcttttgaaatctgcaagtaata |
3172615 |
T |
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| Q |
120 |
tcgtttgcctacaaacactaatattggaagggtgtgaagacgttgaattttctacaaaagatgtctcaaatttaatcaatttgagacaactaattattca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3172614 |
tcgtttgcctacaaacactaatattggaagggtgtgaagacgttgaattttctacaaaagatgtctcaaatttaatcaatttgagacaactaattattca |
3172515 |
T |
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| Q |
220 |
aaatttaactgcctccaaagagaagaaaataacatttggatttggaaaattaggaatgagggagcggcacaagggtgtcgttttttcaaattggttttct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3172514 |
aaatttaactgcctccaaagagaagaaaataacatttggatttggaaaattaggaatgaaggagcggcacaagggtgtcgttttttcaaattggttttct |
3172415 |
T |
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| Q |
320 |
tcactcacatatatt |
334 |
Q |
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||||||||||||||| |
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| T |
3172414 |
tcactcacatatatt |
3172400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 3169133 - 3168952
Alignment:
| Q |
29 |
tgtgattcaattggaaaattgaggcatttaagatatcttaacttatggtactgtgaaggagggagaagtcttttgaaatctgtaagtaatatcgtttgcc |
128 |
Q |
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| T |
3169133 |
tgtgattcaattgtaaaattgaagcatttaagatatcttgacttatggtactgcagaggagtgggaagtgtttttaaatccataactaatatggtttgct |
3169034 |
T |
|
| Q |
129 |
tacaaacactaatattggaagggtgtgaag-acgttgaattttctacaaaagatgtctcaaatttaatcaatttgagacaact |
210 |
Q |
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| T |
3169033 |
tacaaacactaaaactgg-tggggcagaagaatgttccaatttctataaaagatgtctacaatttaatcaatttgagacaact |
3168952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 3281366 - 3281325
Alignment:
| Q |
33 |
attcaattggaaaattgaggcatttaagatatcttaacttat |
74 |
Q |
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| T |
3281366 |
attcaattggaaaattgaaacatttaagatatcttaacttat |
3281325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9849836 - 9849800
Alignment:
| Q |
168 |
tttctacaaaagatgtctcaaatttaatcaatttgag |
204 |
Q |
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| T |
9849836 |
tttctacaaaagttgtctcaaaattaatcaatttgag |
9849800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 13792529 - 13792569
Alignment:
| Q |
34 |
ttcaattggaaaattgaggcatttaagatatcttaacttat |
74 |
Q |
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| T |
13792529 |
ttcaattggaaaattgaaacatttaaggtatcttaacttat |
13792569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 3918025 - 3917865
Alignment:
| Q |
43 |
aaaattgaggcatttaagatatcttaacttatggtactgtgaaggagggagaagtcttttgaaatctgtaagtaatatcgtttgcctacaaacactaata |
142 |
Q |
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|||||||| ||||||||||||||||| |||||| |||||||| || | |||||| | ||||| |||| | | |||||| | |||| ||||||| |
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| T |
3918025 |
aaaattgaagcatttaagatatcttagcttatgtgactgtgaaagattggaaagtctctccaaatccataagcggtcttgtttgcttgcaaagactaata |
3917926 |
T |
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| Q |
143 |
ttggaagggtgtgaagacgttgaattttctacaaaagatgtctcaaatttaatcaatttga |
203 |
Q |
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||| ||| ||| || | |||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
3917925 |
ttgaaagcatgtaaaaaagttgaaatttctacaaaagatgtctctaagttaatcaatttga |
3917865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 7160691 - 7160738
Alignment:
| Q |
29 |
tgtgattcaattggaaaattgaggcatttaagatatcttaacttatgg |
76 |
Q |
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| T |
7160691 |
tgtgaatcaatcggaaaattgaagcatttaagatatcttaacttatgg |
7160738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 46840 - 46881
Alignment:
| Q |
166 |
attttctacaaaagatgtctcaaatttaatcaatttgagaca |
207 |
Q |
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| T |
46840 |
attttctcaaaaaaatgtctcaaatttaatcaatttgagaca |
46881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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