View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_high_11 (Length: 415)
Name: NF21265_high_11
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 29420436 - 29420833
Alignment:
| Q |
1 |
ttattacatttttcttttagatttactttatataaaattaagatgctttcattataaataatgtcatatccttgtcgtgatatattttgtttatattgat |
100 |
Q |
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| T |
29420436 |
ttattacatttttcttttagatttactttatataaaattaagatgctttcattataaataatgtcatatccttgtcgtgatatattttgtttatattgat |
29420535 |
T |
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| Q |
101 |
aagaaaatttagtctgtcataccttatcacgtttaattggactttattataaatgaatatttaatacatatttttataatctttgcattccaattattga |
200 |
Q |
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| T |
29420536 |
aagaaaatttagtctgtcataccttatcacgtttaattggactttattataaatgaatatttaatacatatttttataatctttgcattccaattattga |
29420635 |
T |
|
| Q |
201 |
tcttaattatattcctcaactttggctttaatcacacatgagttccactatataatggcccaagctacacaatttggctgaaaggaacaaatatataaac |
300 |
Q |
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| T |
29420636 |
tcttaattatattcctcaactttggctttaatcacacatgagttccactatataatggcccaagctacacaatttggctgaaaggaacaaatatataaac |
29420735 |
T |
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| Q |
301 |
tatagtcatggtattaaatcttcttcttctcccaagaatcgttgtgattcttagttgtgtggctataattgaagctacaatattgttaaccaaagatg |
398 |
Q |
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| T |
29420736 |
tatagtcatggtattaaatcttcttcttctcccaagaatcgttgtgattcttagttgtgtggctataattgaagctacaatattgttaaccaatgatg |
29420833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 354
Target Start/End: Original strand, 29607918 - 29608039
Alignment:
| Q |
234 |
acacatgagttccactatataatggcccaagctacacaa-tttggctgaaaggaacaaatatataaactatagtcatggtattaaatcttcttcttctcc |
332 |
Q |
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| T |
29607918 |
acacataagttccgctatataagggcccaagctacgcaactttggttgaatgaagcaaatatacgaactatagtcatggcattaaatattcttcttcttt |
29608017 |
T |
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| Q |
333 |
caagaatcgttgtgattcttag |
354 |
Q |
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|| || | |||||||||||||| |
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| T |
29608018 |
caggagttgttgtgattcttag |
29608039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 29462547 - 29462490
Alignment:
| Q |
341 |
gttgtgattcttagttgtgtggctataattgaagctacaatattgttaaccaaagatg |
398 |
Q |
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| T |
29462547 |
gttgtaattcttacctatgtggctataattgaagctacaatattgttaaccaatgatg |
29462490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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