View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_high_13 (Length: 386)
Name: NF21265_high_13
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 125 - 367
Target Start/End: Original strand, 27132416 - 27132657
Alignment:
| Q |
125 |
gtaaattcaacacaaaa-tttataatgaaagaactatgaacacgcttagaatcttgcatgatgacaccaaattcacgttattcaatccctagttcttgag |
223 |
Q |
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| T |
27132416 |
gtaaattcaacacaaaaatttataatgaaagaactataaacacgcttacaatcttgcatgatgacaccaaattcacgttattcaatccctagttcttgag |
27132515 |
T |
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| Q |
224 |
tcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacctatattgtttaagaaattgacctataaagattaaaaataaata |
323 |
Q |
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| T |
27132516 |
tcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacc--aattgtttaagaaattgacctataaagattaaaaataaata |
27132613 |
T |
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| Q |
324 |
cacgatataataatataatttaatttgttatcagatgcatatca |
367 |
Q |
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| T |
27132614 |
cacgatataataatataatttaatttgttatcagatccatatca |
27132657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 27132692 - 27132741
Alignment:
| Q |
318 |
taaatacacgatataataatataatttaatttgttatcagatgcatatca |
367 |
Q |
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| T |
27132692 |
taaatacacgatataataatataatttaatttgttatcagatgcatatca |
27132741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 24151516 - 24151608
Alignment:
| Q |
37 |
acttagtttattattagattatgattagtcattaaataaaataaaaagacatatgtagaaccacctagaatagtttataaccgtctatgtaaatt |
131 |
Q |
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| T |
24151516 |
acttagtctaatactagattatgattagtcattaagtaaaataaaaagacat--gtagaaccacctagaatagtttataaccgcctatgtaaatt |
24151608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 24145866 - 24145944
Alignment:
| Q |
51 |
tagattatgattagtcattaaataaaataaaaagacatatgtagaaccacctagaatagtttataaccgtctatgtaaatt |
131 |
Q |
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| T |
24145866 |
tagattatgattagtcattaagtaaaataaaaagacat--gtagaatcacctagaatagtttataaccgcctatgtaaatt |
24145944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7490683 - 7490564
Alignment:
| Q |
1 |
actatctaaaataatttagaggggatgcaaagtttgacttagtttattatt----------agattatgattagtcattaaataaaataaaaagacatat |
90 |
Q |
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| T |
7490683 |
actatctagaataatggagaagggatgcaaagtttgacttagtctattacttgcctattaaagattatgattagtcactaagtaaaataaaaagaaatat |
7490584 |
T |
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| Q |
91 |
gtagaaccacctagaatagt |
110 |
Q |
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| T |
7490583 |
gcagaaccacctagaatagt |
7490564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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