View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21265_high_21 (Length: 257)
Name: NF21265_high_21
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 8158822 - 8159057
Alignment:
| Q |
4 |
tatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtctgg |
103 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
8158822 |
tatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctgg |
8158921 |
T |
|
| Q |
104 |
aagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaagaag |
203 |
Q |
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|||||||||||| |||||||||||||||||||||| || |||| |||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||| |
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| T |
8158922 |
aagtattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaag |
8159021 |
T |
|
| Q |
204 |
ggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
8159022 |
ggtgattttattacaaatgttaacactggtaagaag |
8159057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18702145 - 18701907
Alignment:
| Q |
1 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || || ||||||||||||||||| |
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| T |
18702145 |
aactattaatggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtc |
18702046 |
T |
|
| Q |
101 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
18702045 |
tggaagtattgatgcaccatttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaag |
18701946 |
T |
|
| Q |
201 |
aagggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
18701945 |
aagggtgattttattacaaatgttaacactggtaagaag |
18701907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4084655 - 4084417
Alignment:
| Q |
1 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| || || |||||||||||||||| |
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| T |
4084655 |
aactatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtt |
4084556 |
T |
|
| Q |
101 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4084555 |
tggaagtattgatgcaccatttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttatctaagaatctatcagggtgttatcaag |
4084456 |
T |
|
| Q |
201 |
aagggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
4084455 |
aagggtgattttattacaaatgttaacaccggtaagaag |
4084417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43896537 - 43896299
Alignment:
| Q |
1 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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|
| T |
43896537 |
aactacttatggagggtgtaattaggtatttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtc |
43896438 |
T |
|
| Q |
101 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaag |
200 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||| ||||| | ||||| || | | | ||||||||||||||||||||||||||||| ||| |
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| T |
43896437 |
tggaagcattgatgcgccatttgttgcaaaggttttcacaaatgtgattaggaatgatggattagtaacttatctaagaatctatcagggtgttattaag |
43896338 |
T |
|
| Q |
201 |
aagggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43896337 |
aagggtgattttattacaaatgttaacactggtaagaag |
43896299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44301885 - 44301645
Alignment:
| Q |
1 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
100 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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|
| T |
44301885 |
aactacttatggaggatgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtc |
44301786 |
T |
|
| Q |
101 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaattt--acttatctaagaatctatcagggtgttatca |
198 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||| |||| |||||| | || ||| || | ||| |||| |||||||||||||||||||||||||| |
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| T |
44301785 |
tggaagtgttgatgcgccatttgtagcaaaggttttcacaaatttgtattggagtgatggattcttttaacttgtctaagaatctatcagggtgttatca |
44301686 |
T |
|
| Q |
199 |
agaagggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44301685 |
agaagggtgattttattacaaatgttaacactggtgagaag |
44301645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44306991 - 44306753
Alignment:
| Q |
1 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||| |||||||||| |
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|
| T |
44306991 |
aactacttagggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtc |
44306892 |
T |
|
| Q |
101 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggc---ataggacctatttaaaatttacttatctaagaatctatcagggtgttatc |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| | | |||| | || ||| ||||||||||||||||||||||||||||| |
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|
| T |
44306891 |
tggaagtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaacttatctaagaatctatcagggtgttatt |
44306795 |
T |
|
| Q |
198 |
aagaagggtgattttattacaaatgttaacactggtgagaag |
239 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
44306794 |
aagaaggatgattttattacaaatgttaacactggtgagaag |
44306753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 44312753 - 44312532
Alignment:
| Q |
18 |
gtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtctggaagtattgatgcac |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||| | |
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|
| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
118 |
catttgttgcaaaggctttcgcaaattggcataggacctattta-aaatttacttatctaagaatctatcagggtgttatcaagaagggtgattttatta |
216 |
Q |
| |
|
||||||| ||||||| |||| ||||| | |||||| || || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44312653 |
catttgtagcaaaggttttcacaaatatgtatagga-ttaggtacttattaacttatctaagaatctatcagggtgttattaagaagggtgattttatta |
44312555 |
T |
|
| Q |
217 |
caaatgttaacactggtgagaag |
239 |
Q |
| |
|
|||| |||||||||||| ||||| |
|
|
| T |
44312554 |
caaacgttaacactggtaagaag |
44312532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 35856591 - 35856799
Alignment:
| Q |
27 |
tatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtctggaagtattgatgcaccatttgttg |
126 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||||||||| ||| || || |||||||| |||||||||||||||||||||| || ||||| | |
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|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
127 |
caaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaa |
226 |
Q |
| |
|
|| ||||||| | | |||||||| || ||||| || |||||||||||||||||||| ||||| | || || ||||||||||| |||||||| |
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|
| T |
35856691 |
cattggctttcacga----gcataggatgctttgtaaattaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaa |
35856786 |
T |
|
| Q |
227 |
cactggtgagaag |
239 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35856787 |
cactggtgagaag |
35856799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
176 |
aagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacactgg |
232 |
Q |
| |
|
|||||||||| ||||||| || |||||| |||||||||||||||| ||||||||| |
|
|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
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