View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21265_low_1 (Length: 993)

Name: NF21265_low_1
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21265_low_1
NF21265_low_1
[»] chr8 (1 HSPs)
chr8 (10-978)||(29650499-29651469)
[»] chr4 (2 HSPs)
chr4 (476-535)||(5078943-5079002)
chr4 (572-632)||(5078944-5079004)
[»] chr7 (1 HSPs)
chr7 (476-545)||(5560978-5561047)
[»] chr1 (2 HSPs)
chr1 (569-622)||(42955646-42955699)
chr1 (570-621)||(19809069-19809120)
[»] chr6 (2 HSPs)
chr6 (569-616)||(27368597-27368644)
chr6 (569-616)||(27458944-27458991)
[»] chr3 (1 HSPs)
chr3 (570-632)||(21144013-21144075)
[»] chr2 (1 HSPs)
chr2 (476-546)||(42467863-42467933)


Alignment Details
Target: chr8 (Bit Score: 857; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 10 - 978
Target Start/End: Complemental strand, 29651469 - 29650499
Alignment:
Q  10 aggagcagagaacaaacagaggatttggagaaaatagaagagaattttactgaatcaaatgaaaatgaagaggataaatcaatggatttgaaatgggaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651469 aggagcagagaacaaacagaggatttggagaaaatagaagagaattttactgaatcaaatgaaaatgaagaggataaatcaatggatttgaaatgggaag 29651370  T
Q  110 atggtaaattgaggacattatctggccattttcttagtggccaaggaaagaatgtgaggataaacattcctttgacaacaccttctcaaaccttttcaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651369 atggtaaattgaggacattatctggccattttcttagtggccaaggaaagaatgtgaggataaacattcctttgacaacaccttctcaaaccttttcaga 29651270  T
Q  210 aattagttaccttgtaatggaagatttgttcaataagtcttcaagaaaatgcaatccagaaggtggtgtgcttcgtgttaataaaacaaggttacatcat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29651269 aattagttaccttgtaatggaagatttgttcaataagtcttcaagaaaatgcaatccagaaggtggtgtgcttcgtgttaataaaacaaggttgcatcat 29651170  T
Q  310 gcagaaaagatgatcaaaggtggtttcattgagctttataagggcctaggatatttgaatgattataggtataattcaaattttctttcatcacaaatat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651169 gcagaaaagatgatcaaaggtggtttcattgagctttataagggcctaggatatttgaatgattataggtataattcaaattttctttcatcacaaatat 29651070  T
Q  410 aactaaatttttaagatttttgttattttgatactcacttttgaaataaaatttcgacaataaattgatggttaatgcagtttaaatttgtggttaatta 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29651069 aactaaatttttaagatttttgttattttgatactcacttttgaaataaaatttagacaataaattgatggttaatgcagtttaaatttgtggttaatta 29650970  T
Q  510 cgtttagtaaatgtttagtgaatatagcaaggtgtcaaatagttaataagttgaaatattttgttatatttattaattatctaataaacgtaattaacca 609  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650969 cgtttagtaaatgtttagtgaatatagcaaggtgtcaaatggttaataagttgaaatattttgttatatttattaattatctaataaacgtaattaacca 29650870  T
Q  610 tatatttgaattgcagtaaccattttagccgttatcgaaattcgatgtcaattttgtgagtcaaag--tannnnnnnnnnaataatgaacttacaataag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          ||||||||||||||||||||    
T  29650869 tatatttgaattgcagtaaccattttagccgttatcgaaattcgatgtcaattttgtgagtcaaagtatattttttttttaataatgaacttacaataag 29650770  T
Q  708 tgttaaatttgatatgnnnnnnnnnnnnttatgtgactgttttcttcatcatattgattttttaggaatttgaacctgcttgcatttataaagattctga 807  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650769 tgttaaatttgatatgaaaaaaaataaattatgtgactgttttcttcatcatattgattttttaggaatttgaacctgcttgcatttataaagattctga 29650670  T
Q  808 agaaatttggcaaggtaaagtgaattagagagtccacaatttatattnnnnnnngaagtttttcatattagaggtgttaataacaaaagcaattcttatg 907  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  29650669 agaaatttgacaaggtaaagtgaattagagagtccacaatttatattaaaaaaagaagtttttcatattagaggtgttaataacaaaagcaattcttatg 29650570  T
Q  908 atttcttctccttcaggtcacagaaaagcaaattcttccaatctatctcaaagtagttgagagttcatatt 978  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650569 atttcttctccttcaggtcacagaaaagcaaattcttccaatctatctcaaagtagttgagagttcatatt 29650499  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 476 - 535
Target Start/End: Original strand, 5078943 - 5079002
Alignment:
Q  476 gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatata 535  Q
    |||||||||||||||| |||| | ||||||||||| ||||||| ||| ||||||||||||    
T  5078943 gatggttaatgcagttcaaatatatggttaattacatttagtagatgattagtgaatata 5079002  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 572 - 632
Target Start/End: Complemental strand, 5079004 - 5078944
Alignment:
Q  572 gttatatttattaattatctaataaacgtaattaaccatatatttgaattgcagtaaccat 632  Q
    |||||||| | |||| ||||| |||| ||||||||||||||||||||| |||| |||||||    
T  5079004 gttatattcactaatcatctactaaatgtaattaaccatatatttgaactgcattaaccat 5078944  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 5561047 - 5560978
Alignment:
Q  476 gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtc 545  Q
    |||| |||||||||||||||| | |||||||||||||| | || ||| ||| |||||||| |||||||||    
T  5561047 gatgattaatgcagtttaaatatatggttaattacgttcactagatggttaatgaatataacaaggtgtc 5560978  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 42955699 - 42955646
Alignment:
Q  569 tttgttatatttattaattatctaataaacgtaattaaccatatatttgaattg 622  Q
    |||||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  42955699 tttgttatatttattaatcatctactaaacctaattaaacatgtatttgaattg 42955646  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 621
Target Start/End: Original strand, 19809069 - 19809120
Alignment:
Q  570 ttgttatatttattaattatctaataaacgtaattaaccatatatttgaatt 621  Q
    |||||||||| |||||| ||||| |||| |||||||||||| ||||||||||    
T  19809069 ttgttatattcattaatcatctactaaatgtaattaaccatgtatttgaatt 19809120  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 616
Target Start/End: Original strand, 27368597 - 27368644
Alignment:
Q  569 tttgttatatttattaattatctaataaacgtaattaaccatatattt 616  Q
    ||||||||||| |||||| ||||| || ||||||||||||||||||||    
T  27368597 tttgttatattcattaatcatctactacacgtaattaaccatatattt 27368644  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 616
Target Start/End: Original strand, 27458944 - 27458991
Alignment:
Q  569 tttgttatatttattaattatctaataaacgtaattaaccatatattt 616  Q
    ||||||||||| |||||| ||||| || ||||||||||||||||||||    
T  27458944 tttgttatattcattaatcatctactacacgtaattaaccatatattt 27458991  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 21144013 - 21144075
Alignment:
Q  570 ttgttatatttattaattatctaataaacgtaattaaccatatatttgaattgcagtaaccat 632  Q
    |||||||||| |||||  ||||| | ||| ||||||||||| ||||||||||||| |||||||    
T  21144013 ttgttatattcattaaccatctacttaacataattaaccatgtatttgaattgcattaaccat 21144075  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 42467933 - 42467863
Alignment:
Q  476 gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtca 546  Q
    |||||||||||||||| |||| |||||||||||| |||||||  ||| |||  || |||| ||||||||||    
T  42467933 gatggttaatgcagttcaaatatgtggttaattatgtttagtggatgcttaacgagtataacaaggtgtca 42467863  T

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