View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_13 (Length: 386)
Name: NF21265_low_13
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 27132302 - 27132657
Alignment:
| Q |
10 |
aattattttagatagttcttgatttaacttctaataggatgcattagtgaaaatatgaaaactagttaaagatatggatttcctttgatatgagtaacca |
109 |
Q |
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| T |
27132302 |
aattattctaaatagttcttgatttaacttctaacaagatgcattagtgaaaatatgaaaactagctaaa-atatggatttcctttgatatgagtaacca |
27132400 |
T |
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| Q |
110 |
ttgatttatctgctagtaaattcaacacaaaa-tttataatgaaagaactatgaacacgcttagaatcttgcatgatgacaccaaattcacgttattcaa |
208 |
Q |
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| T |
27132401 |
ttgatttatctgctagtaaattcaacacaaaaatttataatgaaagaactataaacacgcttacaatcttgcatgatgacaccaaattcacgttattcaa |
27132500 |
T |
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| Q |
209 |
tccctagttcttgagtcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacctatattgtttaagaaattgacctataaa |
308 |
Q |
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| T |
27132501 |
tccctagttcttgagtcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacc--aattgtttaagaaattgacctataaa |
27132598 |
T |
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| Q |
309 |
gattaaaaataaatacacgatataataatataatttaatttgttatcagatgcatatca |
367 |
Q |
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| T |
27132599 |
gattaaaaataaatacacgatataataatataatttaatttgttatcagatccatatca |
27132657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 27132692 - 27132741
Alignment:
| Q |
318 |
taaatacacgatataataatataatttaatttgttatcagatgcatatca |
367 |
Q |
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| T |
27132692 |
taaatacacgatataataatataatttaatttgttatcagatgcatatca |
27132741 |
T |
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