View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_18 (Length: 318)
Name: NF21265_low_18
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_18 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 28215262 - 28214962
Alignment:
| Q |
1 |
tgtgctgacatacttgctcttgcagcgagagattccgnnnnnnnggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215262 |
tgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattt |
28215163 |
T |
|
| Q |
101 |
tggaatttctagcctgcaaattaagggcatgtaaacattttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28215162 |
tggaatttctagcctgcaaattaagggcatgtaaacattttcagttttctttttctaaaacttcttttcattttacattgttaacatggcgatggaaaac |
28215063 |
T |
|
| Q |
201 |
ttgtatagtgaataattttgatagagagaaaatacaaggatagttagggagaaaggatttttagaaacaatgataacattgtctgatccctgcctcgttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28215062 |
ttgtatagtgaataattttgatagagagaaaatacaaggatagttagggagaatggatttttagaaacaatgataacattgtctgatccctgcctcattt |
28214963 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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|
| T |
28214962 |
t |
28214962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 28220994 - 28221247
Alignment:
| Q |
1 |
tgtgctgacatacttgctcttgcagcgagagattccgnnnnnnnggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28220994 |
tgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttcttaacatatttcttctcttaaaagttctcaatcattctcatgcattt |
28221093 |
T |
|
| Q |
101 |
tggaatttctagcctgcaaattaagggcatgtaaacattttcagttttcattttctaaaacttcttttcattttaaattgttaacatg----gcgatgga |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
28221094 |
tgaaatttctagcctgcaaattaagggcatgtaaacattttcagttttcattttctaaaatttcttttcgttttaaattgttaacattaattgcgatgga |
28221193 |
T |
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| Q |
197 |
aaacttgtatagtgaataattttgatagagagaaaatacaaggatagttaggga |
250 |
Q |
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| T |
28221194 |
aaacttgtatggtgaataattttgatagatagaaaatacaaggatagttaggga |
28221247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 12979186 - 12979145
Alignment:
| Q |
134 |
aacattttcagttttcattttctaaaacttcttttcatttta |
175 |
Q |
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| T |
12979186 |
aacattttcagttttcattttctaaaatttatgttcatttta |
12979145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32565051 - 32565015
Alignment:
| Q |
1 |
tgtgctgacatacttgctcttgcagcgagagattccg |
37 |
Q |
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| T |
32565051 |
tgtgctgacatacttgctcttgccgcaagagattccg |
32565015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 23918119 - 23918034
Alignment:
| Q |
138 |
ttttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaacttgtatagtgaataattttgata |
223 |
Q |
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| T |
23918119 |
ttttcagtcttcattttctaaaacctgttttcattttaaattaataaaatggtgatgaaaaactcatatagtgaacaattctgata |
23918034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 32863625 - 32863562
Alignment:
| Q |
206 |
tagtgaataattttgatagagagaaaatacaaggatagttagggagaaaggatttttagaaaca |
269 |
Q |
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| T |
32863625 |
tagtgaatatatgtgatagagagaagatagaaggatagttagggagaatgcattttgagaaaca |
32863562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 26128781 - 26128645
Alignment:
| Q |
137 |
attttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaacttgtatagtgaataattttgatagagagaaaataca |
236 |
Q |
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|||||||||||||||||| ||||| | | |||||||||||||||||||| | |||| || |||||| ||| ||| |||| ||||||||| || | | |
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| T |
26128781 |
attttcagttttcattttttaaaatatatgttcattttaaattgttaacaagtagatgaaagacttgtgtagggaacaattgtgatagagaaaaggtgga |
26128682 |
T |
|
| Q |
237 |
aggatagttagggagaaaggatttttagaaacaatga |
273 |
Q |
| |
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|||| || ||| |||| | ||||||||||||||||| |
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| T |
26128681 |
aggaaagctagaaagaatgcatttttagaaacaatga |
26128645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 45301935 - 45301882
Alignment:
| Q |
133 |
aaacattttcagttttcattttctaaaacttcttttcattttaaattgttaaca |
186 |
Q |
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|||||||||||| |||||||||| |||| || | |||||||||||||| ||||| |
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| T |
45301935 |
aaacattttcagctttcattttccaaaatttatgttcattttaaattgctaaca |
45301882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 102379 - 102427
Alignment:
| Q |
136 |
cattttcagttttcattttctaaaacttcttttcattttaaattgttaa |
184 |
Q |
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||||||||||||||||||||||||| || | ||| ||||| |||||||| |
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| T |
102379 |
cattttcagttttcattttctaaaatttgtgttcgttttagattgttaa |
102427 |
T |
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