View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_2 (Length: 743)
Name: NF21265_low_2
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 51 - 724
Target Start/End: Original strand, 34928702 - 34929375
Alignment:
| Q |
51 |
ttaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgttttcggtc |
150 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928702 |
ttaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgttttcggtc |
34928801 |
T |
|
| Q |
151 |
ttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactgcaaagtttcccgacaagctcagtagtggttaacaaactgaacctcaccaatt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928802 |
ttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactgcaaagttccccgacaagctcagtagtggttaacaaactgaacctcaccaatt |
34928901 |
T |
|
| Q |
251 |
gagtattatattagtgaacattttttatttattaagacctcaaaagctatccaaaagtccatcctataactctatcacttaagatgaaaagctttatttc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34928902 |
gagtattatattagtgaacattttttatttattaagacctcaaaagctatccaaaagtccagcctataactctatcacttaagatgaaaagctttatttc |
34929001 |
T |
|
| Q |
351 |
aaagttcgatttatccctcactcaattttgtgccagctctggtttagctatatgacttcataagtatatcagattctgaacatctagacaaatacataat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34929002 |
aaagttcgatttatccctcactcaattttgtgccagctctggtttagctatatgacttcataagtatatcagattccgaacatctagacaaatacataat |
34929101 |
T |
|
| Q |
451 |
aagcaatgctagaaaacaaaattgaaagagggatagatttgaattgaaaagccagatcatggtcaaattaagtaagaaaaagtagtaaattatatacctt |
550 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34929102 |
aagcaatgctagaaaacaaaattaaaagagggatagatttgaattgaaaagccagatcatggtcaaattaagtaagaaaaagtagtaaattatatacctt |
34929201 |
T |
|
| Q |
551 |
tccttgtccacctctagcactccaaccactaggagctccattagacctgtaatgtgaccactcactcaacgtggcctttcccaatataatagccccagct |
650 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
34929202 |
tccttgtccacctctagcactccaaccactaggagctccattagacctgtaatgtgaccactcactcaaagtggccttgcccaatataatagccccagct |
34929301 |
T |
|
| Q |
651 |
ttccttaacttgttaactacacctgcatctcttggcactactgagccaagcagtgcaaaagagcctgcagtagt |
724 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34929302 |
ttccttaacttgttaactacacctgcatctcttggcactactgagccaagcagtgcaaaagagcctgcagtagt |
34929375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 400 - 724
Target Start/End: Original strand, 34933143 - 34933466
Alignment:
| Q |
400 |
atatgacttcataagtatatcagattctgaacatctagacaaatacataataagcaatgctagaaaacaaaattgaaagagggatagatttgaattgaaa |
499 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||| |||| |||| |||| |||| || |
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| T |
34933143 |
atatgacttcataagaatatcagattcttaacagataggcaaatacatgataagcaatgctacaaaacaaaatttaaagtt--ataggtttggattgcaa |
34933240 |
T |
|
| Q |
500 |
agccagatcatggtcaaattaagtaagaaaaagtagtaaatt-atatacctttccttgtccacctctagcactccaaccactaggagctccattagacct |
598 |
Q |
| |
|
||| ||| ||| ||||||| ||||||||| ||||||||| || |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
34933241 |
agcaagaccatagtcaaataaagtaagaagaagtagtaagtttatatacctttccatgtccacctctggcactccaagcactaggagctccattagacct |
34933340 |
T |
|
| Q |
599 |
gtaatgtgaccactcactcaacgtggcctttcccaatataatagccccagctttccttaacttgttaactacacctgcatctcttggcactactgagcca |
698 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | ||||||| |
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| T |
34933341 |
gtaatatgaccactcactcagggtggccttccccaatataatagccccagctttccttaacttgttaacaacacccgcgtctcttggcaccagtgagcca |
34933440 |
T |
|
| Q |
699 |
agcagtgcaaaagagcctgcagtagt |
724 |
Q |
| |
|
|||| |||||||||||| |||||||| |
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|
| T |
34933441 |
agcaatgcaaaagagccagcagtagt |
34933466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 476 - 724
Target Start/End: Original strand, 34912807 - 34913051
Alignment:
| Q |
476 |
aagagggatagatttgaattgaaaagccagatcatggtcaaattaagtaagaaaaagtagtaaattatatacctttccttgtccacctctagcactccaa |
575 |
Q |
| |
|
||||| |||||||||||||| |||||| || || |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
34912807 |
aagagtgatagatttgaatttaaaagcacgaccaaactcaaattaagtaagaagtagtagtaaatta----cctttccttgtccacctctagcattccaa |
34912902 |
T |
|
| Q |
576 |
ccactaggagctccattagacctgtaatgtgaccactcactcaacgtggcctttcccaatataatagccccagctttccttaacttgttaactacacctg |
675 |
Q |
| |
|
|||| |||| || | |||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| |||| ||||||| |
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|
| T |
34912903 |
ccaccaggaactttactagacctgtaatgtgaccactcactcaaagtggccttccctaatatgatagcaccagctttccttaacttggtaaccacacctg |
34913002 |
T |
|
| Q |
676 |
catctcttggcactactgagccaagcagtgcaaaagagcctgcagtagt |
724 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
34913003 |
catctcttggcacgactgagccaagaagtgcaaaagagccagcagtagt |
34913051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 545 - 721
Target Start/End: Original strand, 34922458 - 34922634
Alignment:
| Q |
545 |
tacctttccttgtccacctctagcactccaaccactaggagctccattagacctgtaatgtgaccactcactcaacgtggcctttcccaatataatagcc |
644 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||| ||||| |
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|
| T |
34922458 |
tacctttccttgtccacctctggcactccaaccactaggagctccattagacctgtaatttgaccactcactcaaagtggctttccccaatatgatagca |
34922557 |
T |
|
| Q |
645 |
ccagctttccttaacttgttaactacacctgcatctcttggcactactgagccaagcagtgcaaaagagcctgcagt |
721 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
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|
| T |
34922558 |
ccagcttcccttaacttggtaacaacacctgcatctcttggcacaactgatccaagcaatgcaaaagagcctgcagt |
34922634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 545 - 724
Target Start/End: Original strand, 34899033 - 34899212
Alignment:
| Q |
545 |
tacctttccttgtccacctctagcactccaaccactaggagctccattagacctgtaatgtgaccactcactcaacgtggcctttcccaatataatagcc |
644 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| ||||||||||| || |||| ||||||||||||||||||| ||||| || |||||||| ||||| |
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|
| T |
34899033 |
tacctttcctagtccacctctggcactccaaccattaggagctccaaaagtcctgaaatgtgaccactcactcaaagtggctttccccaatatgatagca |
34899132 |
T |
|
| Q |
645 |
ccagctttccttaacttgttaactacacctgcatctcttggcactactgagccaagcagtgcaaaagagcctgcagtagt |
724 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||| |
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|
| T |
34899133 |
ccagcttcccttaacttggtaacaacacctgcatctcttggcacaactgatccaagcaatgcaaaagagccagcagtagt |
34899212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 5713221 - 5713118
Alignment:
| Q |
39 |
gaagccacgtaattaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttag |
138 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||| |
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|
| T |
5713221 |
gaaggcacgtaattaggacctttgacaccccattggctacacatagtctttccactagcttcagtcttttggactgataactagactaatctctgcctag |
5713122 |
T |
|
| Q |
139 |
gtgt |
142 |
Q |
| |
|
|||| |
|
|
| T |
5713121 |
gtgt |
5713118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 34932882 - 34932969
Alignment:
| Q |
111 |
actgataatgagactaatctctgcttaggtgttttcggtcttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactg |
198 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||| |||||||| || | |||||||||| |
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|
| T |
34932882 |
actgataatgagactaatctctgcataggtgttttagatcttagcttaaaactcttcaccatggatgtgttttgtggggatcgaactg |
34932969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 34932827 - 34932879
Alignment:
| Q |
35 |
gttggaagccacgtaattaggacctttggcaccccatttgctacacataatat |
87 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34932827 |
gttggaggccatgtaattaggacctttggcaccccaaaagctacacataatat |
34932879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 2882164 - 2882267
Alignment:
| Q |
39 |
gaagccacgtaattaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttag |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||| |
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|
| T |
2882164 |
gaaggcacgtaattaggacctttggcaccccattggctacacatagtctttccactagcttcagtcttttggactgataactagactaatctctgcctag |
2882263 |
T |
|
| Q |
139 |
gtgt |
142 |
Q |
| |
|
|||| |
|
|
| T |
2882264 |
gtgt |
2882267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 16189884 - 16189781
Alignment:
| Q |
39 |
gaagccacgtaattaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttag |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||| |
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|
| T |
16189884 |
gaaggcacgtaattaggacctttggcaccccattggctacacatagtctttccactagcttcagtcttttggactgataactagactaatctctgcctag |
16189785 |
T |
|
| Q |
139 |
gtgt |
142 |
Q |
| |
|
|||| |
|
|
| T |
16189784 |
gtgt |
16189781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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