View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_20 (Length: 313)
Name: NF21265_low_20
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_20 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24247363 - 24247065
Alignment:
| Q |
1 |
actccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaacaccttcgagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24247363 |
actccctgtcaagtgtctcttacgattccgctgcgtctgcaagttgtggaattctctcatctcaattgatagaagttttgcaaataaacaccttagagtg |
24247264 |
T |
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| Q |
101 |
tcaaccaaacgccaccatgtcgtcacaagctcattgaacttcccaccaaagttaactgtaatgtcttacccattggactcttttcaactcaactctagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247263 |
tcaaccaaacgccaccatgtcgtcacaagctcattgaactacccaccaaagttaactgtaatgtcttacccattggactcttttcaactcaactctagtt |
24247164 |
T |
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| Q |
201 |
tcacctctgatgccacgttctcctttgaccactcttccctttatcaactaaatactacgttctatagccgcattctcgttggttcttgcaacggtctcc |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24247163 |
tcacctctgatgccacgttctcctttgatcactctttcctttatcaactaaatactacgttctatagccgcattctcgttggttcttgtgacggtctcc |
24247065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23896966 - 23896904
Alignment:
| Q |
1 |
actccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctc |
63 |
Q |
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| T |
23896966 |
actccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctctaatctc |
23896904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45693705 - 45693578
Alignment:
| Q |
1 |
actccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaacaccttcgagtg |
100 |
Q |
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| T |
45693705 |
actcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcaccttcgcatg |
45693606 |
T |
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| Q |
101 |
tcaaccaaacgccaccatgtcgtcacaa |
128 |
Q |
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| T |
45693605 |
tcaaccaaacaccgccatctcatcacaa |
45693578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 24243567 - 24243489
Alignment:
| Q |
150 |
agttaactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctctgatgccacgttctcctttga |
228 |
Q |
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| T |
24243567 |
agttaagtgtaacgtcttatccattggactctcttaaactcatatctagtttcacctacgatggtatgttctcctttga |
24243489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24805883 - 24805819
Alignment:
| Q |
1 |
actccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaa |
65 |
Q |
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| T |
24805883 |
actccccgtcaaatctctcctccgattccgctctgtctgcaaatcctggaattctctcatctcaa |
24805819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 41044 - 40989
Alignment:
| Q |
153 |
taactgtaatgtcttacccattggactcttttcaactcaactctagtttcacctct |
208 |
Q |
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| T |
41044 |
taactgtaatgtcttatccattcgactctcttcaactcgactctatttttacctct |
40989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 41179 - 41134
Alignment:
| Q |
25 |
attccgctgcgtctgcaagtcgtggaattctctcatctcaattgat |
70 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||| |||| |
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| T |
41179 |
attccgttgcgtctgcaagtcatggaattctctaatctcaaatgat |
41134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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