View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_29 (Length: 239)
Name: NF21265_low_29
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4706395 - 4706174
Alignment:
| Q |
1 |
ttatatcaaaaattaggatttcatcttgattcaaaaggaggtaaaaaagagagagaaatgtgatggaatggaatttaccacataaggaacgccataaagc |
100 |
Q |
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| T |
4706395 |
ttatatcaaaaattaggatttcatcttgattcaaaaggaggtaaaaaagagagagaaatgtgatggaatggaatttaccacataaggaacgccgtaaagc |
4706296 |
T |
|
| Q |
101 |
ttgagtaattgaattggacccattacaaatcctaagcctacaagcaaagcagccatagctgtccaacaaactgtcgaagtaataacatcttttctttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4706295 |
ttgagtaattgaattggacccattacaaatcctaagcctacaagcaaagcagccatagctgtccaacaaactgtcgaagtaataacatcttttctttcat |
4706196 |
T |
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| Q |
201 |
ttggcacaaacaagtcactatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4706195 |
ttggcacaaacaagtcactatt |
4706174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 25267781 - 25267919
Alignment:
| Q |
81 |
cataaggaacgccataaagcttgagtaattgaattggacccattacaaatcctaagcctacaagcaaagcagccatagctgtccaacaaactgtcgaagt |
180 |
Q |
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|||| ||||| ||||||||| |||||||| |||||||||||||| |||||| || ||||||||||| || ||||||| ||||||||| |||| ||||| |
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| T |
25267781 |
catacggaactccataaagcatgagtaatggaattggacccattgtaaatcccaaccctacaagcaatgccaccatagcagtccaacaagctgtagaagt |
25267880 |
T |
|
| Q |
181 |
aataacatcttttctttcatttggcacaaacaagtcact |
219 |
Q |
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| T |
25267881 |
tataatatcttttttctcacttggaagaaacaattcact |
25267919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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