View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_34 (Length: 219)
Name: NF21265_low_34
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 22250126 - 22250026
Alignment:
| Q |
100 |
tattctaattgagatcgattatttggtgttatattttcatttttcatttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
199 |
Q |
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| T |
22250126 |
tattctaattgagatcgattatt-gttgttaaattttcatttttcctttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
22250028 |
T |
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| Q |
200 |
tg |
201 |
Q |
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|| |
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| T |
22250027 |
tg |
22250026 |
T |
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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 22250504 - 22250408
Alignment:
| Q |
3 |
aaatatacagctatcgcagtaaattctattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
99 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22250504 |
aaatatacagctatcgtagtgtattttattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
22250408 |
T |
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