View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_4 (Length: 546)
Name: NF21265_low_4
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 55 - 280
Target Start/End: Original strand, 33047011 - 33047240
Alignment:
| Q |
55 |
accgagtaggattgatatgattaagataagg----aagagttttagtgggtgggatatatgatgtcatattagtatgttattttggtagaagttgttgtc |
150 |
Q |
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| T |
33047011 |
accgagttagattgatgtgattaagataaggaaggaagagttttagtgggtgggatatatgatgtcatattagtatgttattttggtacaagttgttgtc |
33047110 |
T |
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| Q |
151 |
atttgaaacaataggtttatactaggcctttttaggaaagacctataactatttttaaagggatttgaattcagtatattgatgttacatgattaaactc |
250 |
Q |
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| T |
33047111 |
atttgaaacaataggtttatactaggccttttgaggaaagacctataactatttttaaagggatttgaattcagtatattgatgttacaagattaaactc |
33047210 |
T |
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| Q |
251 |
atactattactgctgaatctcttgacataa |
280 |
Q |
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| T |
33047211 |
atactattactgctgaatctcttgaaataa |
33047240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 345 - 536
Target Start/End: Original strand, 33047305 - 33047491
Alignment:
| Q |
345 |
caagtccagcctgatctatcacagccaaacacacccctaacaatctaatagttacgtgtgtacaaaatcaaaataatccaatagttacttgatgtgtgac |
444 |
Q |
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| T |
33047305 |
caagtccagcctgatctatcacagtcaaacacacccctaacaatccaatagttacgtgtgtacaaaatcaaaataatccaatagttacttgatg-----c |
33047399 |
T |
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| Q |
445 |
tatgcccaataaatgtcaaggtcaaaacttgatgataggtcaaggtagttttgaaagaccagtccaaattagaaaggtattcaatcattcat |
536 |
Q |
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| T |
33047400 |
catgcccaataaatgtcaaggtcaaaacttgatgataggtcaaggtagttttgaaagaccagtccaaattaaaaaggtattcaatcattcat |
33047491 |
T |
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