View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_5 (Length: 512)
Name: NF21265_low_5
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 142 - 496
Target Start/End: Complemental strand, 9571793 - 9571439
Alignment:
| Q |
142 |
cttcctagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctcnnnnnnngcagaagccggcg |
241 |
Q |
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| T |
9571793 |
cttcatagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctctttttttgcagaagccggcg |
9571694 |
T |
|
| Q |
242 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571693 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
9571594 |
T |
|
| Q |
342 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaattagcttctgcgtttcaaatattttcaaaattatctgca |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571593 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaattagcttctgcgtttcaaatattttcaaaattatctgca |
9571494 |
T |
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| Q |
442 |
ttaatttttctttaaacatctttaagtttatatatacctctttataagtaaattt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9571493 |
ttaatttttctttaaacatctttaagtttatatatacctctttataagtaaattt |
9571439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 9571926 - 9571853
Alignment:
| Q |
9 |
gaagaatatagctgttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
82 |
Q |
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| T |
9571926 |
gaagaaaatagctgttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
9571853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 3522085 - 3522115
Alignment:
| Q |
52 |
aactatgtagcaccgacaattcagattgaag |
82 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3522085 |
aactatgtagcaccgacaattcagattgaag |
3522115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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