View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21265_low_6 (Length: 465)
Name: NF21265_low_6
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 32709057 - 32708622
Alignment:
| Q |
10 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32709057 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
32708958 |
T |
|
| Q |
110 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32708957 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
32708858 |
T |
|
| Q |
210 |
tcgaattcaccaagatattaatatatatgaaattccttttttctgtggattagggaaccataaaagaagaggagcttgatactttcaacatccctcaata |
309 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32708857 |
tcgaattcaccaagatacta----atatgaaattccttttttatgtggattagggaaccataaaagaagaggagcttgatactttcaacatccctcaata |
32708762 |
T |
|
| Q |
310 |
cactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32708761 |
cactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgat |
32708662 |
T |
|
| Q |
410 |
caatggaatgctcttgcttgtgagtctcaaatgtctgaat |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32708661 |
caatggaatgctcttgcttgtgagtctcaaatgtctgaat |
32708622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 32627466 - 32627340
Alignment:
| Q |
20 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
119 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||| || |
|
|
| T |
32627466 |
tagttgaagggggttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggc |
32627367 |
T |
|
| Q |
120 |
tcttaatgatatggtcttgcaggtaaa |
146 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
32627366 |
tcttaatgacatggtcttggaggtaaa |
32627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 32703557 - 32703490
Alignment:
| Q |
79 |
agcaaggagtgttgctacatttgggaacttatggctatagctcttaatgatatggtcttgcaggtaaa |
146 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
32703557 |
agcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaa |
32703490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 361
Target Start/End: Complemental strand, 32627132 - 32627031
Alignment:
| Q |
260 |
tagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcat |
359 |
Q |
| |
|
||||||| ||||||||||||| | || ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| | | |||||||||| |
|
|
| T |
32627132 |
tagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcat |
32627033 |
T |
|
| Q |
360 |
tt |
361 |
Q |
| |
|
|| |
|
|
| T |
32627032 |
tt |
32627031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 27736133 - 27736012
Alignment:
| Q |
288 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
387 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| |||||||| |||||||||||||| |||||||||||| |||| || ||||| |||||||| |
|
|
| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
|
| Q |
388 |
agtgaattggaatgctcttgat |
409 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
27736033 |
agttaattggaatgctcttgat |
27736012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 27736364 - 27736240
Alignment:
| Q |
20 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
119 |
Q |
| |
|
|||||||||| | || |||||||||||| |||||||||| ||| | ||||| | |||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
27736364 |
tagttgaaggagctcaaatgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgggaactcatggctatggc |
27736265 |
T |
|
| Q |
120 |
tcttaatgatatggtcttgcaggta |
144 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27736264 |
ccttaatgatatggtcttgcaggta |
27736240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 5811091 - 5810967
Alignment:
| Q |
20 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaa-gaagtat--agcaaggagtgttgctacatttgggaacttatggctat |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| ||| || || |||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
5811091 |
tagttgaaggtggtcacatgattctaacatttttaggacgaaaaa---acagtgatccatcaagcaaggagtctggttacatttgggaactcatggctat |
5810995 |
T |
|
| Q |
117 |
agctcttaatgatatggtcttgcaggta |
144 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
5810994 |
ggctcttaatgatatggttttgcaggta |
5810967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
292 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
391 |
Q |
| |
|
||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
|
|
| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
|
| Q |
392 |
aattggaatgctcttga |
408 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 8030519 - 8030641
Alignment:
| Q |
22 |
gttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctc |
121 |
Q |
| |
|
||||| || ||||| ||| |||| ||| | || |||||||||||||| | || |||||||| ||||||||||| |||||||| ||| | ||| | || | |
|
|
| T |
8030519 |
gttgacgggggtcgtatggttctcacaatcttgggaagaaaaagtgatgataaatatagcaaagagtgttgctatatttgggagcttcttgctgttgccc |
8030618 |
T |
|
| Q |
122 |
ttaatgatatggtcttgcaggta |
144 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
8030619 |
ttaatgacatggtcttggaggta |
8030641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 21943132 - 21943087
Alignment:
| Q |
99 |
ttgggaacttatggctatagctcttaatgatatggtcttgcaggta |
144 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
21943132 |
ttgggaacttttggctatggctcttaatgatatggttatgcaggta |
21943087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 20116764 - 20116800
Alignment:
| Q |
98 |
tttgggaacttatggctatagctcttaatgatatggt |
134 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
20116764 |
tttgggaacttttggctacagctcttaatgatatggt |
20116800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
313 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
377 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
|
|
| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University