View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21265_low_7 (Length: 448)
Name: NF21265_low_7
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 446
Target Start/End: Original strand, 2224871 - 2225295
Alignment:
| Q |
14 |
acttctcaccatgtccagccgcctgcgtgtgtcgttagctttggcatgttggctcttaacgtagatggtgttgtgttcctcgaattcaattcatgtgatt |
113 |
Q |
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| T |
2224871 |
acttctcaccatgtccagccgcctgcgtgtgtcgttagctttggcatgttggctcttaacgtagatggtgttgtgttcctcgaattcaattcat------ |
2224964 |
T |
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| Q |
114 |
ttggtggtatcatacaaggtcttttttgcataggtttcttgacaacattaatatcctttgtgttttgcattctaaattcacggggttgtatcatggtttg |
213 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2224965 |
-------------acaaggtcttttctgcataggtttcttgacaacattaatatcctttgtgttttgcattctaaattcatggggtcgtatcatggtttg |
2225051 |
T |
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| Q |
214 |
aagccatgttgtgactctggctataagtaggtgttttctctaactcgagcacaatgattaacctcgtttgaaagaacatatgaatttgtttcacaaatat |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2225052 |
aagccatgttgtgactctggctattagtaggtgttttctctaactcgagcacaatgattaacctcgtttgaaagaacatatgaatttgtttcacaaatat |
2225151 |
T |
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| Q |
314 |
gaaaatttgataagtgttacctagcagctttttcttaaagattagatggttaatttgcaa-----------ctcttccattgacatgacatttatcctct |
402 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2225152 |
gaaaatttgatatgtgttacctagcagctttttcttaaagattagatggttaatttgcaatacactctgttgtcttccattgacatgacatttatcctct |
2225251 |
T |
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| Q |
403 |
tagcgaatattatggaagttgaatttattccaccctaattgagg |
446 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2225252 |
tagcgaatattatgggagttgaatttattccaccttaattgagg |
2225295 |
T |
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