View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21265_low_9 (Length: 432)
Name: NF21265_low_9
Description: NF21265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21265_low_9 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 26721382 - 26720983
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721382 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
26721283 |
T |
|
| Q |
114 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
26721282 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaataaaaattaaagacctaactaaatactttttgaacagca |
26721183 |
T |
|
| Q |
214 |
aaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaataaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26721182 |
aaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaat-aa |
26721084 |
T |
|
| Q |
314 |
aatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatcaacgacaatcggaaacattgg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721083 |
aatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagggaaagagccatcaacgacaatcggaaacattgg |
26720984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 44162158 - 44162069
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca |
393 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||| |||| |
|
|
| T |
44162158 |
aattaaataaaa-tagtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagggaaagagcgatca |
44162069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 45117563 - 45117910
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117563 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
45117662 |
T |
|
| Q |
114 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
45117663 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
45117762 |
T |
|
| Q |
212 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45117763 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatggcgttggtgtatgaattaaat- |
45117861 |
T |
|
| Q |
312 |
aaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45117862 |
aaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
45117910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 19769384 - 19769317
Alignment:
| Q |
313 |
aaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagg |
380 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
19769384 |
aaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcgagtgcgagg |
19769317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 45117904 - 45117941
Alignment:
| Q |
377 |
gagggaaagagccatcaacgacaatcggaaacattgga |
414 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
45117904 |
gaggaaaagagccatcaacgacgatcggaaacattgga |
45117941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 2986501 - 2986154
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2986501 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
2986402 |
T |
|
| Q |
114 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2986401 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
2986302 |
T |
|
| Q |
212 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
2986301 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatgacgttggtgtatgaattaaat- |
2986203 |
T |
|
| Q |
312 |
aaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2986202 |
aaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
2986154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 10495854 - 10495932
Alignment:
| Q |
315 |
atagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca |
393 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
10495854 |
atagtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagggaaagagcgatca |
10495932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 2986160 - 2986123
Alignment:
| Q |
377 |
gagggaaagagccatcaacgacaatcggaaacattgga |
414 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
2986160 |
gaggaaaagagccatcaacgacgatcggaaacattgga |
2986123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 9227 - 9318
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatcaac |
395 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
9227 |
aattaaataaaa-tagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagggaaagagctatcaac |
9318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 16359329 - 16359240
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca |
393 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
16359329 |
aattaaataaaac-agtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcaagggaaagagcgatca |
16359240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 246633 - 246567
Alignment:
| Q |
322 |
aattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagc |
388 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
246633 |
aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagggaaagagc |
246567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 98333 - 98259
Alignment:
| Q |
313 |
aaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagc |
388 |
Q |
| |
|
|||||| |||| |||||||| ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
98333 |
aaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgcaagagaaagagc |
98259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University