View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_2 (Length: 751)

Name: NF21266_high_2
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_2
NF21266_high_2
[»] chr8 (4 HSPs)
chr8 (459-698)||(2791281-2791513)
chr8 (17-399)||(2791573-2791943)
chr8 (17-339)||(2781950-2782280)
chr8 (340-399)||(2781576-2781635)
[»] chr2 (3 HSPs)
chr2 (596-667)||(21637906-21637977)
chr2 (605-645)||(20961499-20961539)
chr2 (598-667)||(36380184-36380253)
[»] chr5 (1 HSPs)
chr5 (596-649)||(17064332-17064385)
[»] chr7 (2 HSPs)
chr7 (611-667)||(245316-245372)
chr7 (340-398)||(34782151-34782209)
[»] chr4 (2 HSPs)
chr4 (595-667)||(8740456-8740528)
chr4 (340-393)||(6061606-6061659)
[»] chr1 (2 HSPs)
chr1 (596-667)||(30054494-30054565)
chr1 (598-667)||(21090126-21090195)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 459 - 698
Target Start/End: Complemental strand, 2791513 - 2791281
Alignment:
Q  459 aaggattaggaatgtatctctatagatattagatagggattatcattaaatcgtttgtatcaagttactattaaaccattattgatcatatttgaactcc 558  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  2791513 aaggattaggaatgtatctctatagata-------gggattatcattaaatcctttctatcaagttactattaaaccattattgatcatgttttaactcc 2791421  T
Q  559 aagaatttggtttagtggcaaaaagacaggctttggtcccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccct 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2791420 aagaatttggtttagtggcaaaaagacaggctttggtcccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaacact 2791321  T
Q  659 ctttgagcctttgctgcatataatgtatgtgtaccagctt 698  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2791320 ctttgagcctttgctgcatataatgtatgtgtaccagctt 2791281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 2791943 - 2791573
Alignment:
Q  17 aaagtattccatggaagtatttgattttgatatacatacataacccaaccatgcaagagaaagtaaaaacattcatatnnnnnnnntcaagaatctcagc 116  Q
    ||||||||||| ||| |||||||||||||||||| |||    | |||||||||||||||||||||||  |||||||||        ||||||||||||||    
T  2791943 aaagtattccaaggaggtatttgattttgatatagata----atccaaccatgcaagagaaagtaaa--cattcatataaaaaaa-tcaagaatctcagc 2791851  T
Q  117 ctctccccttccacccccaccaggtatattctgtgcgtgcatgtgcgtgtgtttgtaaattggaagatgctaat---------aaa----caaccaccaa 203  Q
    |||||||||| |||||| |   |||||||||||||            ||||| |||||||||||||||||||||         |||    ||||||||||    
T  2791850 ctctcccctttcaccccta---ggtatattctgtg------------tgtgtgtgtaaattggaagatgctaattgactgacaaaatcagcaaccaccaa 2791766  T
Q  204 aagtatgtaggagacatcagtcgcctaaaacgatgaaaagattggaaaattgagtaatcttcttatcaagtaaccccagttataatcaatcaaactcata 303  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2791765 aagtatgtaggagacaccagtcgcctaaaacgatggaaagattggaaaattgagtaatcttcttatcaagtaaccc-agttataatcaatcaaactcata 2791667  T
Q  304 tagagatctaagatacaacattcataccaaagaatctcttagtttatctcctaggatcggtttttaatcctagagtatcttaaattatctcttaga 399  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2791666 --gagatctaagatacaacattcataccaaagaatctcttagtttatctcctaggatcggtttttaatcctagagtatcttaaattatctcttaga 2791573  T

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Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 2782280 - 2781950
Alignment:
Q  17 aaagtattccatggaagtatttgattttgatatacatacataacccaaccatgcaagagaaagtaaaaacattcatatnnnnnnnntcaagaatctcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||  || ||||          ||||||||||||||    
T  2782280 aaagtattccatggaagtatttgattttgatatacata----atccaaccatgcaagagaaagtaaa--caatcat---gaaaaaatcaagaatctcagc 2782190  T
Q  117 ctctccccttccacccccaccaggtatattctgtgcgtgca----------tgtgcgtgtgtttgtaaattggaagatgctaataaac------------ 194  Q
    |  ||||||||||||||||   ||||||||||||| |||||          |||| ||||||||||||||||||||||||||||  ||                
T  2782189 caatccccttccaccccca---ggtatattctgtgtgtgcacatgggtgtgtgtgtgtgtgtttgtaaattggaagatgctaattgactgacataatcag 2782093  T
Q  195 -aaccaccaaaagtatgtaggagacatcagtcgcctaaaacgatgaaaagattggaaaattgagtaatcttcttatcaagtaaccccagttataatcaat 293  Q
     |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||    
T  2782092 caaccaccaaaagtatgcaggagacatcagtcgccaaaaacgatgaaaagattggaaaattgagtaatcttcttatcaagtaa-cccaattataattaat 2781994  T
Q  294 caaactcatatagagatctaagatacaacattcataccaaagaatc 339  Q
    |||| ||  |||||||||||||||||||||||||||||||| ||||    
T  2781993 caaattc--atagagatctaagatacaacattcataccaaaaaatc 2781950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 2781635 - 2781576
Alignment:
Q  340 tcttagtttatctcctaggatcggtttttaatcctagagtatcttaaattatctcttaga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2781635 tcttagtttatctcctaggatcggtttttaatcctagagtatcataaattatctcttaga 2781576  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 667
Target Start/End: Original strand, 21637906 - 21637977
Alignment:
Q  596 cccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    |||||||||||||  ||||||| || |||||||||||||||||||||| ||||| |||   |||||||||||    
T  21637906 cccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcc 21637977  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 645
Target Start/End: Original strand, 20961499 - 20961539
Alignment:
Q  605 gagcttcgctagtccccttggagggaggtaaatgtaaatcc 645  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  20961499 gagctccgctagtgcccttggagggaggtaaatgtaaatcc 20961539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 667
Target Start/End: Complemental strand, 36380253 - 36380184
Alignment:
Q  598 cgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    ||||||||| |  ||||||| || |||||||||||||||||||| ||||||| |||   |||||||||||    
T  36380253 cgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcc 36380184  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 17064332 - 17064385
Alignment:
Q  596 cccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatcccttt 649  Q
    |||||||| |||| |||||||| || |||||||||||||||||||||| |||||    
T  17064332 cccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaataccttt 17064385  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 667
Target Start/End: Complemental strand, 245372 - 245316
Alignment:
Q  611 cgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    ||||||| ||||||||||||||||||||||| |  |||| ||||| |||||||||||    
T  245372 cgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcc 245316  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 34782209 - 34782151
Alignment:
Q  340 tcttagtttatctcctaggatcggtttttaatcctagagtatcttaaattatctcttag 398  Q
    |||||||||||||  || |||| |||||||||| |||| ||||||| ||||||||||||    
T  34782209 tcttagtttatctattacgatcagtttttaatcttagaatatcttagattatctcttag 34782151  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 667
Target Start/End: Original strand, 8740456 - 8740528
Alignment:
Q  595 tcccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    ||||||||| ||||  ||||||| || |||||||||||||||||||||| ||||| |||   |||||||||||    
T  8740456 tcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcc 8740528  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 6061659 - 6061606
Alignment:
Q  340 tcttagtttatctcctaggatcggtttttaatcctagagtatcttaaattatct 393  Q
    ||||||||||  || |||||||||||| ||||| |||||||||||||| |||||    
T  6061659 tcttagtttacttcataggatcggtttataatcttagagtatcttaaactatct 6061606  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 667
Target Start/End: Complemental strand, 30054565 - 30054494
Alignment:
Q  596 cccgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    |||||||| ||||  ||||||| || |||||||||||||||||||| | ||||| ||||  |||||||||||    
T  30054565 cccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcc 30054494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 667
Target Start/End: Original strand, 21090126 - 21090195
Alignment:
Q  598 cgggtttgagcttcgctagtccccttggagggaggtaaatgtaaatccctttctaaaccctctttgagcc 667  Q
    |||||| ||||  ||||||| || |||||||||||||||||||||| | ||| ||||  |||||||||||    
T  21090126 cgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcc 21090195  T

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