View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21266_high_27 (Length: 315)
Name: NF21266_high_27
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 43141944 - 43142228
Alignment:
| Q |
16 |
gatgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttacnnnnnnnncccacattaatattgtgcatacatgatgtagtcaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43141944 |
gatgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttacttttttttcccacattaatattgtgcatacatgatgtaatcaat |
43142043 |
T |
|
| Q |
116 |
tacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacgtacagttta--gctcttttatgtatgcttattcttaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43142044 |
tacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacgtacagtttatagctcttttatgtatgcttattcttaaa |
43142143 |
T |
|
| Q |
214 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43142144 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtt |
43142228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 4132986 - 4132910
Alignment:
| Q |
214 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttgg |
290 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||| |||| | | |||| ||| | ||||||||||| |
|
|
| T |
4132986 |
ggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttgg |
4132910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University