View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_31 (Length: 292)

Name: NF21266_high_31
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_31
NF21266_high_31
[»] chr5 (23 HSPs)
chr5 (1-281)||(43235099-43235379)
chr5 (8-125)||(41427657-41427774)
chr5 (1-120)||(41688445-41688564)
chr5 (15-117)||(15051879-15051981)
chr5 (8-120)||(18843953-18844065)
chr5 (1-118)||(19579174-19579292)
chr5 (2-120)||(27339966-27340084)
chr5 (8-120)||(20321181-20321293)
chr5 (30-125)||(22645501-22645596)
chr5 (7-120)||(19377840-19377953)
chr5 (8-92)||(19042235-19042319)
chr5 (8-118)||(18051314-18051424)
chr5 (2-67)||(24648241-24648306)
chr5 (8-57)||(22984643-22984692)
chr5 (8-125)||(13341471-13341588)
chr5 (8-62)||(23172265-23172319)
chr5 (48-125)||(6852340-6852417)
chr5 (8-65)||(43005693-43005750)
chr5 (1-62)||(38158101-38158162)
chr5 (20-67)||(17624851-17624898)
chr5 (8-55)||(30799635-30799682)
chr5 (7-64)||(15446449-15446506)
chr5 (2-63)||(26021551-26021612)
[»] chr8 (26 HSPs)
chr8 (1-125)||(7489057-7489181)
chr8 (8-120)||(5922286-5922398)
chr8 (8-120)||(24414066-24414178)
chr8 (11-115)||(2040360-2040464)
chr8 (1-125)||(11879831-11879955)
chr8 (1-125)||(11897247-11897371)
chr8 (8-120)||(45403267-45403379)
chr8 (15-117)||(16752268-16752370)
chr8 (7-117)||(40541602-40541712)
chr8 (1-120)||(23142405-23142524)
chr8 (9-122)||(19704234-19704347)
chr8 (2-69)||(15294901-15294968)
chr8 (2-69)||(15475270-15475337)
chr8 (17-84)||(27836114-27836181)
chr8 (14-101)||(7262006-7262093)
chr8 (1-64)||(17647228-17647291)
chr8 (12-106)||(32424576-32424670)
chr8 (7-67)||(15761190-15761250)
chr8 (1-128)||(15231852-15231979)
chr8 (1-90)||(17566329-17566418)
chr8 (2-67)||(29384144-29384209)
chr8 (1-125)||(6811050-6811174)
chr8 (2-92)||(24056377-24056467)
chr8 (2-67)||(22910035-22910100)
chr8 (34-67)||(26574949-26574982)
chr8 (34-67)||(29384209-29384242)
[»] chr6 (28 HSPs)
chr6 (8-127)||(7223753-7223872)
chr6 (8-125)||(17103433-17103550)
chr6 (8-125)||(19748571-19748688)
chr6 (8-125)||(22498214-22498331)
chr6 (8-125)||(7918124-7918241)
chr6 (8-125)||(11327336-11327453)
chr6 (9-120)||(26053075-26053186)
chr6 (9-120)||(26073128-26073239)
chr6 (8-127)||(27890624-27890743)
chr6 (8-117)||(15527892-15528001)
chr6 (1-120)||(3573678-3573798)
chr6 (9-125)||(17543504-17543620)
chr6 (37-127)||(21354942-21355032)
chr6 (1-127)||(27233071-27233197)
chr6 (30-120)||(27614435-27614525)
chr6 (19-119)||(31108404-31108504)
chr6 (7-120)||(33583445-33583558)
chr6 (1-125)||(23898042-23898165)
chr6 (13-117)||(17250299-17250404)
chr6 (2-120)||(30912185-30912303)
chr6 (8-126)||(33592924-33593041)
chr6 (14-63)||(8275366-8275415)
chr6 (8-67)||(20432425-20432484)
chr6 (13-63)||(4841665-4841715)
chr6 (14-64)||(1179068-1179119)
chr6 (8-91)||(4596661-4596744)
chr6 (44-83)||(27890582-27890621)
chr6 (1-67)||(2912093-2912159)
[»] chr4 (29 HSPs)
chr4 (7-127)||(55476225-55476345)
chr4 (8-126)||(9770350-9770468)
chr4 (8-120)||(23064740-23064852)
chr4 (1-119)||(9911191-9911309)
chr4 (8-120)||(36121061-36121173)
chr4 (1-89)||(8010946-8011034)
chr4 (1-108)||(13551463-13551570)
chr4 (8-125)||(5375903-5376020)
chr4 (6-67)||(37240475-37240536)
chr4 (1-125)||(6346729-6346853)
chr4 (7-83)||(10143137-10143213)
chr4 (8-115)||(13023796-13023903)
chr4 (30-125)||(7045204-7045299)
chr4 (8-67)||(10394848-10394907)
chr4 (8-69)||(8367440-8367501)
chr4 (2-128)||(24719807-24719926)
chr4 (12-126)||(4157269-4157386)
chr4 (12-126)||(4157556-4157673)
chr4 (8-67)||(5361797-5361856)
chr4 (13-92)||(5943066-5943145)
chr4 (8-67)||(7452744-7452802)
chr4 (2-64)||(7044995-7045057)
chr4 (2-65)||(9149556-9149619)
chr4 (15-65)||(8889462-8889512)
chr4 (2-67)||(18459463-18459528)
chr4 (33-67)||(4157050-4157084)
chr4 (1-67)||(17466310-17466376)
chr4 (44-117)||(8409790-8409863)
chr4 (8-65)||(8743599-8743656)
[»] chr3 (34 HSPs)
chr3 (1-120)||(24619976-24620095)
chr3 (8-125)||(8592173-8592290)
chr3 (8-125)||(28746014-28746131)
chr3 (11-117)||(3041464-3041570)
chr3 (8-117)||(18014229-18014338)
chr3 (8-127)||(20766673-20766792)
chr3 (8-117)||(8560239-8560348)
chr3 (15-117)||(22971054-22971155)
chr3 (9-125)||(29067516-29067631)
chr3 (10-117)||(22355848-22355955)
chr3 (1-67)||(17064538-17064604)
chr3 (2-69)||(13286176-13286243)
chr3 (8-120)||(39428141-39428257)
chr3 (2-120)||(27676668-27676786)
chr3 (8-117)||(19348791-19348900)
chr3 (8-69)||(20756260-20756321)
chr3 (8-125)||(27090680-27090797)
chr3 (17-125)||(41671426-41671534)
chr3 (2-89)||(6136379-6136466)
chr3 (2-120)||(10872494-10872612)
chr3 (1-67)||(28135993-28136059)
chr3 (7-67)||(3449142-3449202)
chr3 (10-92)||(17796805-17796887)
chr3 (10-92)||(19105245-19105327)
chr3 (8-120)||(21553672-21553783)
chr3 (2-92)||(22137509-22137599)
chr3 (60-126)||(24649522-24649588)
chr3 (1-67)||(25870154-25870220)
chr3 (44-117)||(9169869-9169942)
chr3 (2-65)||(42697080-42697143)
chr3 (34-92)||(13006089-13006147)
chr3 (7-64)||(8155964-8156021)
chr3 (10-67)||(27055333-27055390)
chr3 (11-67)||(9152817-9152873)
[»] chr1 (30 HSPs)
chr1 (2-125)||(13100422-13100545)
chr1 (8-120)||(14074262-14074374)
chr1 (1-120)||(16125234-16125353)
chr1 (1-120)||(21846053-21846172)
chr1 (1-125)||(25146542-25146666)
chr1 (14-117)||(17197311-17197414)
chr1 (8-92)||(19009755-19009839)
chr1 (1-128)||(17055691-17055817)
chr1 (8-127)||(9351835-9351954)
chr1 (8-69)||(23528894-23528955)
chr1 (1-125)||(17869524-17869648)
chr1 (8-120)||(12002640-12002750)
chr1 (1-124)||(9128612-9128736)
chr1 (8-116)||(9954816-9954924)
chr1 (8-125)||(18304592-18304702)
chr1 (8-118)||(8773506-8773613)
chr1 (1-125)||(41032547-41032671)
chr1 (7-90)||(16434746-16434829)
chr1 (17-127)||(42179843-42179953)
chr1 (24-126)||(27502128-27502230)
chr1 (1-62)||(30619173-30619234)
chr1 (2-67)||(47786090-47786155)
chr1 (1-67)||(32881551-32881617)
chr1 (35-84)||(9321550-9321599)
chr1 (46-125)||(13276033-13276109)
chr1 (8-67)||(22789421-22789480)
chr1 (74-125)||(9954770-9954821)
chr1 (33-67)||(17055999-17056033)
chr1 (17-65)||(12513518-12513566)
chr1 (7-67)||(21242859-21242919)
[»] chr2 (24 HSPs)
chr2 (1-125)||(19262090-19262214)
chr2 (11-114)||(27523881-27523984)
chr2 (8-120)||(1405021-1405133)
chr2 (8-117)||(974576-974686)
chr2 (11-117)||(20034004-20034110)
chr2 (8-125)||(20063961-20064078)
chr2 (8-118)||(21869102-21869212)
chr2 (1-125)||(31237750-31237874)
chr2 (11-117)||(7302023-7302129)
chr2 (8-125)||(19245827-19245944)
chr2 (1-120)||(25538924-25539043)
chr2 (8-120)||(30433053-30433165)
chr2 (3-78)||(36430081-36430156)
chr2 (11-91)||(34578130-34578210)
chr2 (2-129)||(8428454-8428581)
chr2 (2-64)||(16767017-16767079)
chr2 (12-127)||(27749281-27749396)
chr2 (2-65)||(35565788-35565854)
chr2 (1-64)||(15588690-15588752)
chr2 (2-67)||(13502505-13502570)
chr2 (34-67)||(13502570-13502603)
chr2 (2-67)||(27407023-27407088)
chr2 (2-67)||(29661101-29661166)
chr2 (17-65)||(15627991-15628039)
[»] chr7 (39 HSPs)
chr7 (1-120)||(17811579-17811698)
chr7 (2-126)||(4247588-4247712)
chr7 (11-117)||(25842513-25842619)
chr7 (8-120)||(8304324-8304436)
chr7 (8-120)||(24989553-24989664)
chr7 (8-120)||(5715523-5715631)
chr7 (1-120)||(20570664-20570783)
chr7 (1-120)||(5058760-5058878)
chr7 (8-117)||(1981107-1981214)
chr7 (1-120)||(44944624-44944743)
chr7 (1-108)||(9685085-9685192)
chr7 (8-91)||(24725280-24725363)
chr7 (11-117)||(23618211-23618317)
chr7 (1-67)||(39182387-39182453)
chr7 (2-67)||(26565380-26565445)
chr7 (11-117)||(27221655-27221762)
chr7 (8-126)||(11326521-11326639)
chr7 (2-67)||(8329876-8329941)
chr7 (1-65)||(14055488-14055552)
chr7 (1-65)||(14365516-14365580)
chr7 (8-91)||(4574968-4575051)
chr7 (2-67)||(1977781-1977845)
chr7 (2-67)||(8343634-8343699)
chr7 (2-67)||(8346363-8346428)
chr7 (8-125)||(8572375-8572491)
chr7 (2-64)||(8329814-8329876)
chr7 (2-64)||(21846282-21846344)
chr7 (2-67)||(22687099-22687164)
chr7 (7-60)||(26340212-26340264)
chr7 (8-67)||(21157525-21157584)
chr7 (1-67)||(7730191-7730257)
chr7 (43-125)||(10285677-10285759)
chr7 (10-91)||(8629536-8629617)
chr7 (36-120)||(26281169-26281251)
chr7 (10-62)||(30294486-30294538)
chr7 (2-57)||(8346308-8346363)
chr7 (12-67)||(17741886-17741941)
chr7 (1-51)||(27509260-27509310)
chr7 (44-92)||(8253991-8254039)
[»] scaffold0186 (1 HSPs)
scaffold0186 (8-117)||(8679-8788)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-125)||(56199-56316)
[»] scaffold0079 (1 HSPs)
scaffold0079 (11-117)||(14708-14814)
[»] scaffold0017 (1 HSPs)
scaffold0017 (11-125)||(38301-38414)
[»] scaffold0061 (1 HSPs)
scaffold0061 (11-127)||(76081-76196)
[»] scaffold0526 (1 HSPs)
scaffold0526 (8-128)||(8394-8514)
[»] scaffold2084 (1 HSPs)
scaffold2084 (23-117)||(81-175)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-69)||(132945-133003)
[»] scaffold0028 (1 HSPs)
scaffold0028 (7-67)||(145825-145885)
[»] scaffold0042 (2 HSPs)
scaffold0042 (2-65)||(93539-93602)
scaffold0042 (34-67)||(93602-93635)
[»] scaffold0417 (1 HSPs)
scaffold0417 (8-86)||(7268-7346)
[»] scaffold0150 (1 HSPs)
scaffold0150 (7-65)||(33175-33233)
[»] scaffold0603 (1 HSPs)
scaffold0603 (7-64)||(8794-8851)
[»] scaffold0534 (1 HSPs)
scaffold0534 (1-90)||(901-990)
[»] scaffold0182 (1 HSPs)
scaffold0182 (11-106)||(24627-24722)
[»] scaffold0048 (2 HSPs)
scaffold0048 (8-67)||(61146-61205)
scaffold0048 (10-64)||(48497-48551)
[»] scaffold0510 (1 HSPs)
scaffold0510 (1-67)||(36-101)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-64)||(142867-142923)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 43235099 - 43235379
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  43235099 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttatgagtactgattttgctattccctttcgtctcgaag 43235198  T
Q  101 taaagtcccgattttgacaaacttgattcaaagtttttgagtcggcacatatggtggatagttgcagctataaagtgcagcggcgatgggtgcttgattt 200  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  43235199 taaagtcccaattttgacaaccttgattcaaagtttttgagtcggcacatatggtggatagttgcagctataaagtgcagcggcgatgggtggctgattt 43235298  T
Q  201 tcatgtggaggtgcattatatcctgaccatttccttcatttcaattgcagcttcatggaactttattaatatcattttcat 281  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43235299 ttatgtggaggtgcattatatccttaccatttccttcatttcaattgcagcttcatggaactttattaatatcattttcat 43235379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 41427657 - 41427774
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||| ||||||||||||||    
T  41427657 tatatcgattctacaaaagtcctcgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctactccctttcgactcgaagtaaagtc 41427756  T
Q  108 ccgattttgacaaacttg 125  Q
     |||||||||||| ||||    
T  41427757 tcgattttgacaaccttg 41427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41688564 - 41688445
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||| |  |||||||||||||||||||||   |||    
T  41688564 aattttctatatcgattctacaaaagtccttaagtaaaatccttcgattttggttgcgattttaggagtcccgattttgctattccctttcgtcctaaag 41688465  T
Q  101 taaagtcccgattttgacaa 120  Q
    ||||||||||||||||||||    
T  41688464 taaagtcccgattttgacaa 41688445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 15051981 - 15051879
Alignment:
Q  15 attctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattt 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||| ||||| || ||||||||||||||||||    
T  15051981 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctactccttttcgacttgaagtaaagtcccgattt 15051882  T
Q  115 tga 117  Q
    |||    
T  15051881 tga 15051879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 18843953 - 18844065
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |  ||||||||||||||||||| |  ||||||||||     
T  18843953 tatatggattctacaaaagtccttgagtaaaatactccgattttgattgcgattttacgagtcccgattttgctattccctttcgacctgaagtaaagtt 18844052  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  18844053 ccgattttgacaa 18844065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 19579174 - 19579292
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgc-tattccctttcgtctcgaa 99  Q
    |||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| | |||||||| || ||||||||| |  |||    
T  19579174 aattttctataacgattctacaaaagtccttgagtgaaatccttcgattttgattgcgattttatgagtcccaattttgcttactccctttcgacctgaa 19579273  T
Q  100 gtaaagtcccgattttgac 118  Q
    ||||| |||||||||||||    
T  19579274 gtaaaatcccgattttgac 19579292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 27340084 - 27339966
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||| |    ||||||||||||||||||  || |||||    
T  27340084 atttcttatatcaattctacaaaagtccgtgagtaaaatccttcgattttgattgcgatttcacgattttcgattttgctattccctttcaacttgaagt 27339985  T
Q  102 aaagtcccgattttgacaa 120  Q
    ||||| |||||||||||||    
T  27339984 aaagttccgattttgacaa 27339966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 20321181 - 20321293
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||| |  ||||| ||||||| ||| | |  |||||||||||    
T  20321181 tatatagattctacaaaagtccttcagtaaaatccttcaattttgattgcgattttatgagtcccgattttactattcctttttgacctgaagtaaagtc 20321280  T
Q  108 ccgattttgacaa 120  Q
    || ||||||||||    
T  20321281 ccaattttgacaa 20321293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 22645596 - 22645501
Alignment:
Q  30 ttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||| | |  |||||||||| |||| |||||||| ||||    
T  22645596 ttgagtaaaatccttcgattttgattgcaattttacgagtctcaattttgctattccctttagaccagaagtaaagttccgactttgacaaccttg 22645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 19377840 - 19377953
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||| |    ||||||||||||||||||  ||  |||||||||    
T  19377840 ttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtaaatttacgattctcgattttgctattccctttccacttaaagtaaagt 19377939  T
Q  107 cccgattttgacaa 120  Q
     | || ||||||||    
T  19377940 actgactttgacaa 19377953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 19042319 - 19042235
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    |||||||||||||||||||| ||| |||||||| |||||||||| |||| |||||||||||| |  ||||||||||| |||||||    
T  19042319 tatatcgattctacaaaagtccttaagtaaaattcttcgattttaattgtgattttacgagtccctattttgctatttcctttcg 19042235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 18051424 - 18051314
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||| | |||||| ||| |||||||||||||||| ||| ||| |  ||||| ||||||||||||| |   ||||||| ||    
T  18051424 tatatcgattctacaaaagtccttcaataaaattctttgattttgattgcgattctacaagtcccgatttttctattccctttcgacctaaagtaaaatc 18051325  T
Q  108 ccgattttgac 118  Q
    |||||||||||    
T  18051324 ccgattttgac 18051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 24648241 - 24648306
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||| ||||||||||||||  ||||||||||||||| |||||||||| |||||||||||    
T  24648241 attttttatattgattctacaaaagtagttgagtaaaatcctttgattttgattacgattttacga 24648306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 22984692 - 22984643
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgc 57  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  22984692 tatatcgattctacaaaattccttgagtaaaatccttcgattttgattgc 22984643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 13341588 - 13341471
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtact-aattttgctattccctttcgtctcgaagtaaagt 106  Q
    ||||||||||||||||||||  | ||||||| |||||| |||| | |||||||||||||| |  | |||||| |||||||||||||  | |||| ||| |    
T  13341588 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctattccctttcgatttgaagcaaaat 13341490  T
Q  107 cccgattttgacaaacttg 125  Q
    |||||||||||||| ||||    
T  13341489 cccgattttgacaaccttg 13341471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 23172319 - 23172265
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattt 62  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  23172319 tatatcgattctacaaaagtctttgagtaaaattcttcgattttgattacgattt 23172265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 6852417 - 6852340
Alignment:
Q  48 ttttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    |||||||||| |||||| |||| |  ||||||||||||||||||| |  ||||| |||||||||||||||||| ||||    
T  6852417 ttttgattgcaattttatgagtcccgattttgctattccctttcgacctgaagtgaagtcccgattttgacaaccttg 6852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 43005750 - 43005693
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||||||||||||||||   |||||||||||| ||| |||||||||||||||||||    
T  43005750 tatatcgattctacaaaagaagttgagtaaaatctttcaattttgattgcgattttac 43005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38158162 - 38158101
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattt 62  Q
    ||||| ||| || |||||||||||| |  ||||||||||||||||||||||| |||||||||    
T  38158162 aatttcttacatagattctacaaaaatagttgagtaaaatccttcgattttggttgcgattt 38158101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 17624851 - 17624898
Alignment:
Q  20 acaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||  |||||||||||| || ||||||||||||||||||||||    
T  17624851 acaaaagtagttgagtaaaatcttttgattttgattgcgattttacga 17624898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30799635 - 30799682
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgatt 55  Q
    ||||||||||||||||||||  ||| ||||||||||||||||| ||||    
T  30799635 tatatcgattctacaaaagtagttgtgtaaaatccttcgatttcgatt 30799682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 15446449 - 15446506
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||||||||||||||||||||  | || |||||||||||| ||| ||||| |||||||    
T  15446449 ttatatcgattctacaaaagtagtcgactaaaatccttcggtttcgattgtgatttta 15446506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 26021551 - 26021612
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttt 63  Q
    |||| ||||||||||  |||| ||||  |||||||||||||| |||||||||||| ||||||    
T  26021551 atttcttatatcgatgttacacaagtagttgagtaaaatcctacgattttgattgtgatttt 26021612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 7489181 - 7489057
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||    
T  7489181 aattttctatatcgattctacaaaagtccttgagtaaaatcctccgattttgattgcgattttacgagtcctaattttgctatttcctttcgacttgaag 7489082  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||||||| ||||||||||| ||||    
T  7489081 taaagtcctgattttgacaaccttg 7489057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 5922286 - 5922398
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  || || ||||||||||||||||||| |  |||||||||||    
T  5922286 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattgtacatgttctgattttgctattccctttcgacctgaagtaaagtc 5922385  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  5922386 ccgattttgacaa 5922398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 24414178 - 24414066
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |  ||||||||||     
T  24414178 tatatcgattctacaaaaattcttgagtaaaatccttcgattttgattgcgattttacgagtctaaattttgctattccctttcgacatgaagtaaagtt 24414079  T
Q  108 ccgattttgacaa 120  Q
    || ||||||||||    
T  24414078 ccaattttgacaa 24414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 2040360 - 2040464
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |  ||||||||| || |||||| || ||||||||||||||    
T  2040360 atcgattctacaaaagtccatgagtaaaatccttcgattttgattgcgattttacgagttccgattttgctactctctttcgacttgaagtaaagtcccg 2040459  T
Q  111 atttt 115  Q
    |||||    
T  2040460 atttt 2040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 11879831 - 11879955
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| | |  ||||    
T  11879831 aattttctatatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaag 11879930  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||| ||||||||||||||| ||||    
T  11879931 taaaatcccgattttgacaaccttg 11879955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 11897247 - 11897371
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| | |  ||||    
T  11897247 aattttctatatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaag 11897346  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||| ||||||||||||||| ||||    
T  11897347 taaaatcccgattttgacaaccttg 11897371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 45403267 - 45403379
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| |  ||| |||||||    
T  45403267 tatatcgattctacaaaagtctttaagtaaaatccttcgattttgattgcgattttacgagtctcgattttgctattccctttcgacgtgaaataaagtc 45403366  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  45403367 ccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 16752268 - 16752370
Alignment:
Q  15 attctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattt 114  Q
    ||||||||||| | |||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||| || |||||||||| || ||||    
T  16752268 attctacaaaattccttgagtaaaatccttcgattttgtttgcgattttacgagtcccaattttgctactccctttcgacttgaagtaaagttccaattt 16752367  T
Q  115 tga 117  Q
    |||    
T  16752368 tga 16752370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 40541712 - 40541602
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    |||||||||||||||| |||| ||||| ||||||| ||| ||||||||||||||||||||||| |  ||||||||| | ||||||| || ||||||||||    
T  40541712 ttatatcgattctacagaagtccttgaataaaatctttcaattttgattgcgattttacgagtcccgattttgctacttcctttcgacttgaagtaaagt 40541613  T
Q  107 cccgattttga 117  Q
    |||||||||||    
T  40541612 cccgattttga 40541602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 23142405 - 23142524
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| |||||||||||||||||||||| |||| ||||||| ||||||||  ||||||||||||||| |||   ||||||||||||||||||  | |||     
T  23142405 aatttcttatatcgattctacaaaagtttttgactaaaatcattcgatttaaattgcgattttacgattaccggttttgctattccctttcgaattgaaa 23142504  T
Q  101 taaagtcccgattttgacaa 120  Q
    |||||||| |||||||||||    
T  23142505 taaagtcctgattttgacaa 23142524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 19704347 - 19704234
Alignment:
Q  9 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    ||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||| |  ||||||||||||||||| | || |||||||| |||    
T  19704347 atatcgattctacaacagtccttgagtaaattcctttgattttgattgcgattttacgagtcccgattttgctattccctttggacttgaagtaaaatcc 19704248  T
Q  109 cgattttgacaaac 122  Q
    | ||| | ||||||    
T  19704247 caattctaacaaac 19704234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 15294901 - 15294968
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15294901 atttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttaggagt 15294968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 15475270 - 15475337
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15475270 atttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttaggagt 15475337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 27836181 - 27836114
Alignment:
Q  17 tctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctatt 84  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27836181 tctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgaatcctaattttgctatt 27836114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 7262006 - 7262093
Alignment:
Q  14 gattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |  ||||||||| | ||||||| || |||||    
T  7262006 gattctacaaaagtccttgagtaaaatcctttaattttgattgcgattttacgagtcccgattttgctacttcctttcgactggaagt 7262093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17647228 - 17647291
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    ||||| ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  17647228 aatttcttatatcgattctacaaaactagttgagtaaaatccttcgattttgattgcgatttta 17647291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 32424576 - 32424670
Alignment:
Q  12 tcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg-tctcgaagtaaagt 106  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |  | |||||||||||| |||| ||| ||||||||||    
T  32424576 tcgattctacaaaactccttgagtaaaatccttcgattttaattgcgattttacgagttccga-tttgctattccccttcgatcttgaagtaaagt 32424670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 15761250 - 15761190
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||    
T  15761250 ttatatcgattctacaaaagtaattgagtaaaatccttcgatttatattgcgattttacga 15761190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 15231852 - 15231979
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||| | |||||||  |||||||||||||| |    |||||||| ||| |||||| || ||||    
T  15231852 aattttttatatcgattctacaaaagtagttgagtaaaatcgtacgattttagttgcgattttacgattgtcgattttgctcttctctttcgacttgaag 15231951  T
Q  101 taaagtcccgattttgacaaacttgatt 128  Q
     ||| || ||| ||| |||| |||||||    
T  15231952 caaaatctcgaatttaacaaccttgatt 15231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17566329 - 17566418
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattcccttt 90  Q
    ||||| |||||||  ||||||||||||  ||||||||||| |||||||||||||||| ||||||||| |   ||||||||| ||||||||    
T  17566329 aatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctcttcccttt 17566418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 29384209 - 29384144
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||  |||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  29384209 atttcttatattaattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacga 29384144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6811050 - 6811174
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||| |||||||||||||  |||| |||||| ||||||||||| |||||||||||||| |    |||||||| ||| ||||||  | |||     
T  6811050 aatttcttatatctattctacaaaagtagttgattaaaattcttcgattttggttgcgattttacgattgtcgattttgctcttctctttcgatttgaaa 6811149  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
     ||||| ||||||||||||| ||||    
T  6811150 caaagttccgattttgacaaccttg 6811174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 24056467 - 24056377
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtact-aattttgctattccctttcg 92  Q
    |||| |||||| |||||||||||| |  |||||||||||||||||||||||||| | |||||| || || | ||||||||| ||||||||||    
T  24056467 atttgttatattgattctacaaaactagttgagtaaaatccttcgattttgattaccattttatga-tattcaattttgctcttccctttcg 24056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 22910100 - 22910035
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||||||||||||||| |  |||| ||||||||||| |||| | ||||||||||||||    
T  22910100 atttcttatatcgattctacaaaaatagttgaataaaatccttcaatttcggttgcgattttacga 22910035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 26574982 - 26574949
Alignment:
Q  34 gtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||| |||||||||||||||||||||    
T  26574982 gtaaaatccttcaattttgattgcgattttacga 26574949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 29384242 - 29384209
Alignment:
Q  34 gtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||| ||||||||||||||||||||||||    
T  29384242 gtaaaatccatcgattttgattgcgattttacga 29384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 7223753 - 7223872
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||| |  |||||||||||    
T  7223753 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacgagtcccgattttgctattccctttcgacctgaagtaaagtc 7223852  T
Q  108 ccgattttgacaaacttgat 127  Q
    ||||||||||||| ||||||    
T  7223853 ccgattttgacaaccttgat 7223872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 17103433 - 17103550
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| || |||||| |||||||||||| || |||||||||||    
T  17103433 tatatcgattctacaaaagtccttgagtaaaatccttcggtattgattgcgattttacgagtcctgattttgttattccctttcgacttgaagtaaagtc 17103532  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  17103533 ccgattttgacaaccttg 17103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19748571 - 19748688
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||  |  ||| |||||||    
T  19748571 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgaatcccgattttgctattccctttcaacctgaattaaagtc 19748670  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  19748671 ccgattttgacaaccttg 19748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22498331 - 22498214
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||| |  |||||||||||    
T  22498331 tatatcgattctacaaaagtctttgagtaaaatcgttcaattttgattgcgattttacgagtcccaattttgctattccctttcgacctgaagtaaagtc 22498232  T
Q  108 ccgattttgacaaacttg 125  Q
    || |||||||||| ||||    
T  22498231 ccaattttgacaaccttg 22498214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 7918241 - 7918124
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| || ||| ||||||||||||||| |  ||||||||| |    
T  7918241 tatattgattctacaaaagtccttgagtaaaattcttcgattttgattgcaattttacgagtcctgattctgctattccctttcgacctgaagtaaagcc 7918142  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  7918141 ccgattttgacaaccttg 7918124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 11327453 - 11327336
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||  |  ||||||||| |    
T  11327453 tatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagcc 11327354  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  11327353 ccgattttgacaaccttg 11327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 26053186 - 26053075
Alignment:
Q  9 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||| | |||||||||||| ||||||| |  ||||||||||||    
T  26053186 atatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcc 26053087  T
Q  109 cgattttgacaa 120  Q
     |||||||||||    
T  26053086 tgattttgacaa 26053075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 26073239 - 26073128
Alignment:
Q  9 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||| | |||||||||||| ||||||| |  ||||||||||||    
T  26073239 atatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcc 26073140  T
Q  109 cgattttgacaa 120  Q
     |||||||||||    
T  26073139 tgattttgacaa 26073128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 27890624 - 27890743
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| | |||||| ||| ||||||||  || |||||||||||    
T  27890624 tatatcgattctacaaaagtccttgagtaaaatccttcaattttgattacgattttacgagttccaattttactactccctttcaacttgaagtaaagtc 27890723  T
Q  108 ccgattttgacaaacttgat 127  Q
     ||| |||||||| ||||||    
T  27890724 tcgaatttgacaaccttgat 27890743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 15528001 - 15527892
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||| ||||||| |  |||||||||||    
T  15528001 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttccgagttccgattttgctatttcctttcgacctgaagtaaagtc 15527902  T
Q  108 ccgattttga 117  Q
      ||||||||    
T  15527901 aggattttga 15527892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 3573798 - 3573678
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccc-tttcgtctcgaa 99  Q
    ||||| ||||||| ||||||||| |||  ||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||| ||||| |  |||    
T  3573798 aatttcttatatctattctacaagagtagttgagtaaattcctacgattttgattgcgattttacgagtcctgattttgctattcccttttcgacctgaa 3573699  T
Q  100 gtaaagtcccgattttgacaa 120  Q
    |||||||||||||||||||||    
T  3573698 gtaaagtcccgattttgacaa 3573678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 17543620 - 17543504
Alignment:
Q  9 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |  ||||||||||||| ||||| |  ||||||||||||    
T  17543620 atatcgattctacaaaagtccttgagtaaaatccttcgattttgatttcgattttatgagtcccgattttgctattccttttcgacctgaagtaaagtcc 17543521  T
Q  109 cgattttgacaaacttg 125  Q
    | ||||| |||| ||||    
T  17543520 caattttaacaaccttg 17543504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 21354942 - 21355032
Alignment:
Q  37 aaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttgat 127  Q
    |||||| |||||||||||||||||||||||||| || ||||| ||||||||||||  || |||||||| |||| |||||||||| ||||||    
T  21354942 aaatccatcgattttgattgcgattttacgagtcctgatttttctattccctttcaacttgaagtaaaatcccaattttgacaaccttgat 21355032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27233197 - 27233071
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||| |||| |  ||||||  ||||||||| | |  ||||    
T  27233197 aattttctatagcgattctactaaagaccttgagtaaaatccttcaattttgattgcgattttatgagtcccgattttgtcattcccttttgacctgaag 27233098  T
Q  101 taaagtcccgattttgacaaacttgat 127  Q
    ||||| | |||||||||||| ||||||    
T  27233097 taaaggctcgattttgacaaccttgat 27233071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 27614525 - 27614435
Alignment:
Q  30 ttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaa 120  Q
    ||||||||||||||||||||||||||| |||||||||||| |  ||||| ||||||||||||| |  |||||||| |||  ||||||||||    
T  27614525 ttgagtaaaatccttcgattttgattgtgattttacgagtcccgattttactattccctttcgacctgaagtaaattcctaattttgacaa 27614435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 31108404 - 31108504
Alignment:
Q  19 tacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgac 118  Q
    ||||||||| ||| ||||||||| || ||||||||||||| |||||||| |    ||||||||||||||||||| |  |||||||||||| |||||||||    
T  31108404 tacaaaagtcctttagtaaaatcttttgattttgattgcggttttacgaatctcgattttgctattccctttcgacctgaagtaaagtcctgattttgac 31108503  T
Q  119 a 119  Q
    |    
T  31108504 a 31108504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 33583558 - 33583445
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga-gtactaattttgctattccctttcgtctcgaagtaaag 105  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||||  ||||||||||  ||| | | ||||||  |||||||| |  ||||||||     
T  33583558 ttatatcgattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccctttcgaccggaagtaaaa 33583460  T
Q  106 tcccgattttgacaa 120  Q
    |||||||||||||||    
T  33583459 tcccgattttgacaa 33583445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 23898042 - 23898165
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||||||||||| || ||||||||||| |    |||||||| ||| | |||| |  ||||    
T  23898042 aatttcttatatcgattctacaaa-gtagttgagtaaaatccttcgattttggtttcgattttacgattgtcgattttgctcttctcattcgacctgaag 23898140  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
     ||| ||||||||||||||| ||||    
T  23898141 caaaatcccgattttgacaatcttg 23898165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 17250299 - 17250404
Alignment:
Q  13 cgattctacaaaagttcttgagtaaaatccttcg--attttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||| ||||  |||||||||||||||||   ||||||||||||||||||||||| | || || || ||| ||||||| |  ||||||||||||||    
T  17250299 cgattctactaaagaccttgagtaaaatccttctttattttgattgcgattttacgagtcccaa-ttcgccatttcctttcgacctgaagtaaagtcccg 17250397  T
Q  111 attttga 117  Q
    |||||||    
T  17250398 attttga 17250404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 30912303 - 30912185
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| ||||||||||| |||||||||  |||| ||||||||||| |||||| ||| |||||||||| ||   |||||||||||| |||||  |  ||||     
T  30912303 atttcttatatcgattttacaaaagtagttgaataaaatccttcaattttggttgagattttacgattatcgattttgctattctctttcaacctgaagc 30912204  T
Q  102 aaagtcccgattttgacaa 120  Q
    ||| | |||||||||||||    
T  30912203 aaaattccgattttgacaa 30912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 33593041 - 33592924
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||| |||||||||||||  ||||||||| || |||||||| |||||| ||||||||| |   ||||||| ||||||||||||    |||| ||| ||    
T  33593041 tatatcaattctacaaaagtagttgagtaaa-tcattcgatttcgattgcaattttacgattttcaattttgttattccctttcgatatgaagcaaaatc 33592943  T
Q  108 ccgattttgacaaacttga 126  Q
    ||||||||||||| |||||    
T  33592942 ccgattttgacaatcttga 33592924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 8275415 - 8275366
Alignment:
Q  14 gattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttt 63  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  8275415 gattttacaaaagtccttgagtaaaatccttcgattttaattgcgatttt 8275366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 20432484 - 20432425
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||||||||| |  || |||||||| |||| |||||||||||||||||||||    
T  20432484 tatatcgattctacaaaactagttaagtaaaattcttcaattttgattgcgattttacga 20432425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 4841715 - 4841665
Alignment:
Q  13 cgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttt 63  Q
    |||||||||||||||  ||||||||||||||| ||||||||||| ||||||    
T  4841715 cgattctacaaaagtagttgagtaaaatcctttgattttgattgtgatttt 4841665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 1179068 - 1179119
Alignment:
Q  14 gattctacaaaagttcttgagtaaaatccttc-gattttgattgcgatttta 64  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||| ||||    
T  1179068 gattctacaaaagtagttgagtaaaatccttcagattttgattgcgacttta 1179119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 4596744 - 4596661
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttc 91  Q
    |||||| |||||| ||||||  ||||||| |||||||| ||||||||||| ||||||| | |  | ||||||||| ||||||||    
T  4596744 tatatcaattctagaaaagtaattgagtagaatccttcaattttgattgcaattttacaattttttattttgctactccctttc 4596661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 27890582 - 27890621
Alignment:
Q  44 tcgattttgattgcgattttacgagtactaattttgctat 83  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  27890582 tcgattttgattgcgattttacgagtcctgattttgctat 27890621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2912159 - 2912093
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||| | |||||||||||||  |||||||||||||||| |||| ||||  ||||||||||    
T  2912159 aatttcttataacaattctacaaaagtagttgagtaaaatccttcaatttcgattatgattttacga 2912093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 55476225 - 55476345
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||  || ||||||||| || ||||||||||    
T  55476225 ttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtaccgattttattactccctttcgacttgaagtaaagt 55476324  T
Q  107 cccgattttgacaaacttgat 127  Q
    ||||||||||| || ||||||    
T  55476325 cccgattttgataaccttgat 55476345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 9770350 - 9770468
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |   ||||||||||    
T  9770350 tatatcgattctacaaaagaccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctattccctttcgacctaaagtaaagtc 9770449  T
Q  108 ccgattttgacaaacttga 126  Q
    ||||||||||||| |||||    
T  9770450 ccgattttgacaaccttga 9770468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 23064852 - 23064740
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |  |||| | |||||||||||| |  |||||||||||    
T  23064852 tatatcgattctacaaaagtccttgaataaaatccttcaattttgattgcgattttacgagttccgatttcgttattccctttcgacctgaagtaaagtc 23064753  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  23064752 ccgattttgacaa 23064740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 9911309 - 9911191
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |  ||||| |||||||||||||    ||||    
T  9911309 aatttcttatatcgattctacaaaagttctcgagtaaaatccttcgttttttattgcgattttacgagtcccgattttactattccctttcgatatgaag 9911210  T
Q  101 taaagtcccgattttgaca 119  Q
    ||||||||  |||||||||    
T  9911209 taaagtcctaattttgaca 9911191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 36121061 - 36121173
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |  |||  |||||||||||||  || ||||||||| |    
T  36121061 tatatcgatactacaaaagtccttgagtaaaatctttcgattttgattccgattttacgagtcccgattaagctattccctttcaacttgaagtaaagac 36121160  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  36121161 ccgattttgacaa 36121173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8011034 - 8010946
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctt 89  Q
    ||||| |||||||||||||| |||| |  |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  8011034 aatttcttatatcgattctataaaaatagttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctattccctt 8010946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13551570 - 13551463
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| || |||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||  | ||||||||||||| ||||| |  ||||    
T  13551570 aattttctaaatcgattctataaaagtcctcgagtaaaatccttcgattttaattgcgattttacgagtcttgattttgctattccttttcgaccagaag 13551471  T
Q  101 taaagtcc 108  Q
    ||||||||    
T  13551470 taaagtcc 13551463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 5375903 - 5376020
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||   ||| | |  |||||||||||    
T  5375903 tatatagattctacagaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttactatttatttttgacctgaagtaaagtc 5376002  T
Q  108 ccgattttgacaaacttg 125  Q
    || |||||||||| ||||    
T  5376003 ccaattttgacaaccttg 5376020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 37240475 - 37240536
Alignment:
Q  6 tttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37240475 tttatatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacga 37240536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6346853 - 6346729
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||  |||||||||||||  ||||||||||||||||||||||||||| |||||||||| |    |||||||| |||||||||| |  ||||    
T  6346853 aatttcttatattcattctacaaaagtagttgagtaaaatccttcgattttgattgtgattttacgattttcgattttgctcttccctttcgacctgaag 6346754  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
     ||| | ||||||||||||| ||||    
T  6346753 caaatttccgattttgacaaccttg 6346729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 10143137 - 10143213
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctat 83  Q
    ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10143137 ttatatcgattctacaaaattagttgaataaaatccttcgattttgattgcgattttacgattgttaattttgctat 10143213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13023796 - 13023903
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||| ||||||| | |||| |||||||| ||| || ||||||| |||||||||||| |  |||||||||||| |||||| || |||||||||||    
T  13023796 tatatcgattttacaaaattccttgggtaaaatcattctatcttgattgtgattttacgagttccgattttgctattctctttcgacttgaagtaaagtc 13023895  T
Q  108 ccgatttt 115  Q
    || |||||    
T  13023896 ccaatttt 13023903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 7045204 - 7045299
Alignment:
Q  30 ttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    ||||||||||||||||||||||||||||||||||| || |  | |||||||| |||||||||| |  |||||||| | || |||||||||| ||||    
T  7045204 ttgagtaaaatccttcgattttgattgcgattttatgatttttgattttgctcttccctttcgacctgaagtaaaattcctattttgacaaccttg 7045299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 10394848 - 10394907
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  10394848 tataccgattctacaaaagtagttgagtaaagtccttcgattttgattgcgattttacga 10394907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 8367440 - 8367501
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||||||||  ||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  8367440 tatatcgatattaccaaagtccttgagtaaaatccttcgattttgattgcaattttacgagt 8367501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 24719807 - 24719926
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| |||||||||||||||||||||  | |||||||||||||||||| ||||| ||||||| ||       |||||||| |||||||||| |  ||||     
T  24719807 atttcttatatcgattctacaaaagtaatcgagtaaaatccttcgattgtgatttcgatttttcg-------attttgctcttccctttcgacctgaagc 24719899  T
Q  102 aaagtcccgattttgacaaacttgatt 128  Q
    ||| || |||||||||||| |||||||    
T  24719900 aaaatctcgattttgacaaccttgatt 24719926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 4157269 - 4157386
Alignment:
Q  12 tcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac---gagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||||||||||||   || |    |||||||| |||||||||| ||  ||| ||| |||    
T  4157269 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157368  T
Q  109 cgattttgacaaacttga 126  Q
    ||||||||| ||||||||    
T  4157369 cgattttgataaacttga 4157386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 4157556 - 4157673
Alignment:
Q  12 tcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac---gagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||||||||||||   || |    |||||||| |||||||||| ||  ||| ||| |||    
T  4157556 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157655  T
Q  109 cgattttgacaaacttga 126  Q
    ||||||||| ||||||||    
T  4157656 cgattttgataaacttga 4157673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 5361856 - 5361797
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||    
T  5361856 tatatcgattctacaaaagtagttgagtaaaacccttcgattttgtttgcaattttacga 5361797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 5943145 - 5943066
Alignment:
Q  13 cgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    |||||||||||||||  |||||||||||||||| |||||  |||||||||||||| |  | |||||||| ||||||||||    
T  5943145 cgattctacaaaagtagttgagtaaaatccttcaattttacttgcgattttacgatttttgattttgctcttccctttcg 5943066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 7452744 - 7452802
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  7452744 tatattgattctacaaaagtagttgagtaaa-tccttcgattttgattgcgattttacga 7452802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 7044995 - 7045057
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||| ||||||||||| | |||||||  |||||||||||| ||||||||||||||||||||||    
T  7044995 atttcttatatcgattattcaaaagtagttgagtaaaatcattcgattttgattgcgatttta 7045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 9149619 - 9149556
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||| ||||||||||||||| |||||  |||||||||||||||| ||||||||||  |||||||    
T  9149619 atttcttatatcgattctacgaaagtagttgagtaaaatccttcaattttgattggaattttac 9149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 8889462 - 8889512
Alignment:
Q  15 attctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||||||||    
T  8889462 attctacaaaagtagttgagtaagatccttcgattttggttgcgattttac 8889512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 18459528 - 18459463
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||| ||||||||||| |  || ||| ||||||||||||||| |||||||||||||||    
T  18459528 atttcttatatcaattctacaaaattagttaagtcaaatccttcgattttaattgcgattttacga 18459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 4157050 - 4157084
Alignment:
Q  33 agtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||| ||||||||||||||||||||||||    
T  4157050 agtaaaatccatcgattttgattgcgattttacga 4157084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17466310 - 17466376
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| |||||||||||| ||||||||  ||||||| |||| ||| |||||| |||| |||||||||    
T  17466310 aatttcttatatcgattccacaaaagtagttgagtataatctttcaattttgtttgcaattttacga 17466376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 8409790 - 8409863
Alignment:
Q  44 tcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttga 117  Q
    |||||||||||| ||||||||  | |   |||||||||| ||||||||  || |||||||||||||||||||||    
T  8409790 tcgattttgattacgattttataaatctcaattttgctactccctttcaacttgaagtaaagtcccgattttga 8409863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 8743656 - 8743599
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||||||| |||||| ||  |||||||||||| ||||||||||||| |||| ||||    
T  8743656 tatatcgattatacaaatgtagttgagtaaaatctttcgattttgattacgatgttac 8743599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 24620095 - 24619976
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| | || ||||    
T  24620095 aattttctatatcgattctacaaaagtctttgagtaaaatccttcgattttgattgcgattttacaagtcccaattttgctattcccttttgacttgaag 24619996  T
Q  101 taaagtcccgattttgacaa 120  Q
    |||||| |||||||||||||    
T  24619995 taaagttccgattttgacaa 24619976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 8592290 - 8592173
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||| || |||||||||||    
T  8592290 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtctcgattttgctatttcctttcgacttgaagtaaagtc 8592191  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||| ||||| ||||    
T  8592190 ccgatttcgacaaccttg 8592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 28746014 - 28746131
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  |||||||||||  |||||| |  |||||||||||    
T  28746014 tatatcgattctacaaaagttcttgagtaaaattcttcgattttgattgcgattttacgagtcccgattttgctattttctttcgacctgaagtaaagtc 28746113  T
Q  108 ccgattttgacaaacttg 125  Q
    || |||||||||| ||||    
T  28746114 ccaattttgacaaccttg 28746131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 3041464 - 3041570
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||| ||||| || |||||||| |||||    
T  3041464 atcgtttctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaaatcccg 3041563  T
Q  111 attttga 117  Q
    |||||||    
T  3041564 attttga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 18014229 - 18014338
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||   || |||||||||||    
T  18014229 tatatcggttttataaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccaattttgctactccattttaacttgaagtaaagtc 18014328  T
Q  108 ccgattttga 117  Q
    ||||||||||    
T  18014329 ccgattttga 18014338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 20766792 - 20766673
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||| ||||||  ||||||||||||  |||||||||||||||||||||||||||    ||||||||| || ||||||  | |||||||||||    
T  20766792 tatatcgattctccaaaagcccttgagtaaaatttttcgattttgattgcgattttacgagtctcgattttgctactctctttcgagttgaagtaaagtc 20766693  T
Q  108 ccgattttgacaaacttgat 127  Q
    ||||||||||||| ||||||    
T  20766692 ccgattttgacaaccttgat 20766673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 8560348 - 8560239
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||||||||||| ||||||    ||||||||| ||||||| | || |||||||||||    
T  8560348 tatattgattctacaaaaaaccttgagtaaaatccttcgattttgattgcgatttcacgagtctcgattttgctactcccttttgacttgaagtaaagtc 8560249  T
Q  108 ccgattttga 117  Q
    ||||||||||    
T  8560248 ccgattttga 8560239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 22971054 - 22971155
Alignment:
Q  15 attctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattt 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| | |||||   || ||||||||||||| ||||    
T  22971054 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctact-ccttttaacttgaagtaaagtcccaattt 22971152  T
Q  115 tga 117  Q
    |||    
T  22971153 tga 22971155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 29067516 - 29067631
Alignment:
Q  9 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcc 108  Q
    ||||| ||||||||||| | |||||||||||||||||||||| ||||| ||||||| |||| |  |||||||||||||| |||| |  |||||||||| |    
T  29067516 atatcaattctacaaaaatccttgagtaaaatccttcgattt-gattgagattttatgagttccgattttgctattcccattcgacctgaagtaaagttc 29067614  T
Q  109 cgattttgacaaacttg 125  Q
    |||||||||||| ||||    
T  29067615 cgattttgacaaccttg 29067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 22355955 - 22355848
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtccc 109  Q
    |||||||| ||||||||| ||||| ||||||| || |||||||||||||||||||||||| |  ||||||||||||| ||||| |  || ||||||| ||    
T  22355955 tatcgattttacaaaagtccttgaataaaatcttttgattttgattgcgattttacgagtcccgattttgctattccatttcgacctgatgtaaagttcc 22355856  T
Q  110 gattttga 117  Q
    ||||||||    
T  22355855 gattttga 22355848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17064538 - 17064604
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17064538 aatttcttatattgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacga 17064604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 13286176 - 13286243
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||| |||||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||    
T  13286176 atttcttatatcgattctacaaaagtagttgagtaaaatcttttgattttgattgcgattttacgagt 13286243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 39428141 - 39428257
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattt----tgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaa 103  Q
    ||||||||||| |||||| |  |||||||||||||||||||||    |||||||||||||| |||| |  ||||||||||||||||||  |   ||||||    
T  39428141 tatatcgattccacaaaaatctttgagtaaaatccttcgatttattttgattgcgattttatgagtcccgattttgctattccctttcaaccgcaagtaa 39428240  T
Q  104 agtcccgattttgacaa 120  Q
    |||||||||||||||||    
T  39428241 agtcccgattttgacaa 39428257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 27676668 - 27676786
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| ||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||| || |    |||||||| |||||||||| || ||||     
T  27676668 atttcttatatcgattttacaaaagtagttgagtaaaatctttcgattttgattgcgattttaagattttcgattttgctcttccctttcgacttgaagc 27676767  T
Q  102 aaagtcccgattttgacaa 120  Q
    ||| ||| |||||| ||||    
T  27676768 aaaatcctgattttaacaa 27676786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 19348791 - 19348900
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||| || |||||| ||| | ||||||||||| |||||||||||||||||||||||    ||||||||| ||||||| | || |||||||||||    
T  19348791 tatatcgattttataaaagtccttcaataaaatccttccattttgattgcgattttacgagtctcgattttgctactcccttttgacttgaagtaaagtc 19348890  T
Q  108 ccgattttga 117  Q
     | |||||||    
T  19348891 tcaattttga 19348900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 20756260 - 20756321
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||    
T  20756260 tatatcgattctacaaaaatccttgagtaaaatctttcaattttgattgcgattttacgagt 20756321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 27090680 - 27090797
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||| ||||||| | ||||||||||||||||||||||| |||||||| |||||| |   |||||| ||||||||||||| |   ||||||| ||    
T  27090680 tatatcgattatacaaaattccttgagtaaaatccttcgatttttattgcgatcttacgatttgcaatttttctattccctttcgacctaaagtaaaatc 27090779  T
Q  108 ccgattttgacaaacttg 125  Q
     |||||| ||||| ||||    
T  27090780 tcgatttcgacaaccttg 27090797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 41671426 - 41671534
Alignment:
Q  17 tctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttg 116  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||| | ||   |||||||| ||| |||||| |  |||| ||| |||||||||||    
T  41671426 tctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacaattatcgattttgctcttctctttcgacctgaagcaaaatcccgattttg 41671525  T
Q  117 acaaacttg 125  Q
    |||| ||||    
T  41671526 acaaccttg 41671534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 6136466 - 6136379
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctt 89  Q
    |||| |||||||||||||| ||||||  |||||||||||| || |||||||||||||||||||||| |  | |||||||| |||||||    
T  6136466 atttcttatatcgattctataaaagtagttgagtaaaatcttttgattttgattgcgattttacgatttttgattttgcttttccctt 6136379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 10872612 - 10872494
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| ||||||||||||| |||||||  || ||||||||||||| |||||||||||||||||| || |  | ||||| || |||||||| | |  |||||    
T  10872612 atttcttatatcgattcttcaaaagtagtttagtaaaatccttcaattttgattgcgattttatgatttttgatttttctcttcccttttgacctgaagt 10872513  T
Q  102 aaagtcccgattttgacaa 120  Q
    ||| ||| |||||||||||    
T  10872512 aaaatcctgattttgacaa 10872494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28135993 - 28136059
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||||| ||| |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  28135993 aatttcttatatcaattttacaaaagtagttgagtaaaatccttcgattttgatagcgattttacga 28136059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 3449202 - 3449142
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||| ||||||||||||||    
T  3449202 ttatatcgattctacaaaagtagttgaataaaatcattcgattttggttgcgattttacga 3449142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 17796805 - 17796887
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    ||||||||||||||||||  ||||||||||| |||||||||| ||||| ||||||||| |  | ||||| || ||||||||||    
T  17796805 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttttatttttcttttccctttcg 17796887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 19105245 - 19105327
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    ||||||||||||||||||  ||||||||||| |||||||||| ||||| ||||||||| |  | ||||| || ||||||||||    
T  19105245 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttttatttttcttttccctttcg 19105327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 21553783 - 21553672
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaat-ccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    |||||| ||||||||||||| ||||| |||||  |||||||||||||||||||||  || ||| |  ||||| ||| |||||||||  | ||||||||||    
T  21553783 tatatcaattctacaaaagtccttgaataaaaaaccttcgattttgattgcgatt--accagtcccgatttttctactccctttcgatttgaagtaaagt 21553686  T
Q  107 cccgattttgacaa 120  Q
    ||||||||| ||||    
T  21553685 cccgatttttacaa 21553672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 22137509 - 22137599
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    |||| |||||||||||||||||||||  ||||||||||| ||| ||||||| ||| |||||||| | | || |||||||| ||| ||||||    
T  22137509 atttcttatatcgattctacaaaagtagttgagtaaaattctttgattttggttgtgattttactattgctgattttgctcttctctttcg 22137599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 24649588 - 24649522
Alignment:
Q  60 ttttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttga 126  Q
    |||||||||| | |||||||||||||||||||| |  ||||||||||||| |||||||||| |||||    
T  24649588 ttttacgagtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaaccttga 24649522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25870220 - 25870154
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||||||||||||||||  |  ||||||||||||||| ||||||| ||||||||||||||    
T  25870220 aatttcttatatcgattctacaaacttagttgagtaaaatcctttgattttggttgcgattttacga 25870154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 9169869 - 9169942
Alignment:
Q  44 tcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttga 117  Q
    |||||||||||||| |||||||| || | |||||||||| | ||||||| || |||||||||| ||||||||||    
T  9169869 tcgattttgattgcaattttacgggtcccaattttgctacttcctttcgacttgaagtaaagttccgattttga 9169942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 42697080 - 42697143
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||| |||||||||||||||||||||  |||| ||||||||||| |||||  ||||||||||||    
T  42697080 atttcttatatcgattctacaaaagtagttgaataaaatccttcaattttagttgcgattttac 42697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 13006089 - 13006147
Alignment:
Q  34 gtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    |||||||| ||| ||||||||||||||||||||| |   ||||||||||||||||||||    
T  13006089 gtaaaatcattcaattttgattgcgattttacgattttcaattttgctattccctttcg 13006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 8156021 - 8155964
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    ||||||| || ||||||||||  ||||||||||||||||||| ||  |||||||||||    
T  8156021 ttatatcaatgctacaaaagtagttgagtaaaatccttcgatcttagttgcgatttta 8155964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 27055333 - 27055390
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||| ||| || ||||||| | ||| ||||| |||||||||||||||    
T  27055333 tatcgattctacaaatgttttttagtaaaacctttcaattttaattgcgattttacga 27055390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 9152873 - 9152817
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||| |  |||||| ||||| |||||||||| || |||||||||||    
T  9152873 atcgattctacaaaaatagttgagtcaaatctttcgattttggttacgattttacga 9152817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 13100422 - 13100545
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |  ||||||| ||||||||||| || |||||    
T  13100422 atttcttatatcgattctacaaatgtccttgagtaaaatcctttgattttgattgcgattttacgagttccgattttgccattccctttcgacttgaagt 13100521  T
Q  102 aaagtcccgattttgacaaacttg 125  Q
    ||||||||||||||||||| ||||    
T  13100522 aaagtcccgattttgacaaccttg 13100545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 14074374 - 14074262
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||| |  |||||||||||    
T  14074374 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttatgagttccaattttgctattccctttcgacctgaagtaaagtc 14074275  T
Q  108 ccgattttgacaa 120  Q
    | |||||||||||    
T  14074274 ctgattttgacaa 14074262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16125353 - 16125234
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |  ||||    
T  16125353 aatttcttatatcgattctacaaatgtccttgagtaaaatccttcgattttgattgcgattttacgagtcccaattttactattccctttcgacctgaag 16125254  T
Q  101 taaagtcccgattttgacaa 120  Q
    |||||| |||||||| ||||    
T  16125253 taaagttccgattttaacaa 16125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21846172 - 21846053
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||| |  | ||    
T  21846172 aatttcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttaagagtcccgattttgctattccctttcgacctggag 21846073  T
Q  101 taaagtcccgattttgacaa 120  Q
    |||||||| |||||||||||    
T  21846072 taaagtcctgattttgacaa 21846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 25146666 - 25146542
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||  |  ||||    
T  25146666 aattttctatatcgattctacgaaagaccttgagtaaaatccttcgattttgattgcgattttacgatttccgattttgctattccctttcaacctgaag 25146567  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||||||| ||||||||||| ||||    
T  25146566 taaagtcctgattttgacaaccttg 25146542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 17197414 - 17197311
Alignment:
Q  14 gattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgatt 113  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |  ||||||||| ||||||||| || |||||||||||||||||    
T  17197414 gattctacaaaagtccttgagtaaaatccttcgattttagttgcgattttacgagttccgattttgctactccctttcgacttgaagtaaagtcccgatt 17197315  T
Q  114 ttga 117  Q
    ||||    
T  17197314 ttga 17197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 19009839 - 19009755
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||    
T  19009839 tatatcgattttacaaaagttcttgagtaaaatcctttgattttgattgcgattttacgagtcccgattttgctattccctttcg 19009755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 17055817 - 17055691
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |  ||||| | || |||||||| | | |||    
T  17055817 aatttcttgtatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttacaatcccctttcgac-ctaag 17055719  T
Q  101 taaagtcccgattttgacaaacttgatt 128  Q
    ||||| |||||||||||||| |||||||    
T  17055718 taaagacccgattttgacaaccttgatt 17055691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 9351954 - 9351835
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| |||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||| |  |||||||||||| |||||| |  |||||||||||    
T  9351954 tatatagattctacaaaagtccttggataaaatcctacgattttgattgcgattttacgagtcccgattttgctattcgctttcgacctgaagtaaagtc 9351855  T
Q  108 ccgattttgacaaacttgat 127  Q
      ||||||||||| ||||||    
T  9351854 ttgattttgacaaccttgat 9351835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 23528894 - 23528955
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23528894 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagt 23528955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17869648 - 17869524
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||||||| || ||||||| |||||| |||||||||||||||| ||||||||||||||||||||| || |  |||||||| |||||||| | |  |||     
T  17869648 aattttttacattgattctataaaagtccttgagtaaaatcctttgattttgattgcgattttacgtgtcccgattttgctcttcccttttgacctgaat 17869549  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    || ||||||||||||||||| ||||    
T  17869548 tagagtcccgattttgacaatcttg 17869524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 12002750 - 12002640
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||   ||||||||||||||||||||| |||| ||||||  |||| | |||||||||| ||||||||| ||  || |||||||    
T  12002750 tatatcgattctacaaaagtctatgagtaaaatccttcgatttttattgtgatttt--gagtcccaattttgctactccctttcgacttaaattaaagtc 12002653  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  12002652 ccgattttgacaa 12002640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9128736 - 9128612
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgt-ctcgaa 99  Q
    |||||| ||||||||| |||||||| | ||| |||||||||||||||||||||| | |||||||||||| |  |||||||||||||||||  | || ||     
T  9128736 aattttctatatcgatcctacaaaaatcctttagtaaaatccttcgattttgatcgtgattttacgagtcccgattttgctattcccttttttacttgag 9128637  T
Q  100 gtaaagtcccgattttgacaaactt 124  Q
    ||||| |||||||||||| ||||||    
T  9128636 gtaaaatcccgattttgataaactt 9128612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 9954924 - 9954816
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| ||||||  |||||| |||  |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |   |||||||||     
T  9954924 tatatggattcttgaaaagtcctttggtaaaatccttcgattttgattgcgattttacgagtcccgattttgctattccctttcgaccttaagtaaagtt 9954825  T
Q  108 ccgattttg 116  Q
    |||||||||    
T  9954824 ccgattttg 9954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 18304702 - 18304592
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||       |||||||| || ||||||| |  ||||| |||||    
T  18304702 tatatcgattctacaaaagtcctttagtaaaatccttcgattttgaatgcgattttacg-------attttgctttttcctttcgacctgaagtgaagtc 18304610  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  18304609 ccgattttgacaaccttg 18304592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 8773506 - 8773613
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||| ||||||||||| | ||| ||||||||||||| ||||| ||||||||||||||||   | ||| ||||||||||||||| ||  ||||||||||    
T  8773506 tatatcaattctacaaaaatccttaagtaaaatccttcaattttaattgcgattttacgag---tcattctgctattccctttcgactttaagtaaagtc 8773602  T
Q  108 ccgattttgac 118  Q
     ||||||||||    
T  8773603 tcgattttgac 8773613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 41032671 - 41032547
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||||||||||||||| |  ||||||||||| ||||||||||  |||||||||||||| ||  ||||||||| ||| |||||  |  ||||    
T  41032671 aatttcttatatcgattctacaaaactagttgagtaaaattcttcgattttagttgcgattttacgattatcaattttgctcttctctttcaacctgaag 41032572  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||| |||| |||||||||| ||||    
T  41032571 taaaatccctattttgacaaccttg 41032547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 16434746 - 16434829
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattcccttt 90  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||| |    |||||||||||||||||    
T  16434746 ttatatcaattctacaaaagttgtcgagtaaaatccttcgattttgattgcaattttacgattttcgattttgctattcccttt 16434829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 42179953 - 42179843
Alignment:
Q  17 tctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttg 116  Q
    ||||||||||| || || |||||||||||||||||||||||||||||||||||    ||| |||||||||||||   | ||||||||| | | |||||||    
T  42179953 tctacaaaagtcctcgaataaaatccttcgattttgattgcgattttacgagtttcgattatgctattcccttttaacccgaagtaaatttctgattttg 42179854  T
Q  117 acaaacttgat 127  Q
    |||| ||||||    
T  42179853 acaaccttgat 42179843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 27502230 - 27502128
Alignment:
Q  24 aagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaact 123  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||     |||||||||||  | | | || |||||||| ||||||||||||||| ||    
T  27502230 aagttcttgagtaaaatccttcgattttgattgcaattttatgagtctcggttttgctattctatgttgacttgaagtaaattcccgattttgacaacct 27502131  T
Q  124 tga 126  Q
    |||    
T  27502130 tga 27502128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30619173 - 30619234
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattt 62  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||  |||||||||    
T  30619173 aatttttcatatcgattctacaaaagtagttgagtaaaatccttcgatttttgttgcgattt 30619234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 47786090 - 47786155
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||| |||||||||||||  ||||||||||||||||||||||| ||| ||||||||||    
T  47786090 atttcttatatcaattctacaaaagtagttgagtaaaatccttcgattttggttgtgattttacga 47786155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32881551 - 32881617
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| |||||||||||||||||| ||  |||||||||||||||||||||   ||||||||||||||    
T  32881551 aatttcttatatcgattctacaaacgtagttgagtaaaatccttcgatttcagttgcgattttacga 32881617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 9321599 - 9321550
Alignment:
Q  35 taaaatccttcgattttgattgcgattttacgagtactaattttgctatt 84  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  9321599 taaaatccttcgattttgattgcgattttacgagttccgattttgctatt 9321550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 13276109 - 13276033
Alignment:
Q  46 gattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    |||| ||||||||||||||||||| || |||||||||||| |||||| |    |||||||||||||||||||||| ||||    
T  13276109 gattctgattgcgattttacgagtcctgattttgctattctctttcgac---cagtaaagtcccgattttgacaatcttg 13276033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 22789421 - 22789480
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||| ||||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  22789421 tatatcgagtctacaaaagtccattagtaaaatcctttgattttgattgtgattttacga 22789480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 9954821 - 9954770
Alignment:
Q  74 attttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    ||||||||||||||||||| |   ||||||||||||||||||||||| ||||    
T  9954821 attttgctattccctttcgaccttaagtaaagtcccgattttgacaaccttg 9954770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 17056033 - 17055999
Alignment:
Q  33 agtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||| ||||||||||||||||||||||||    
T  17056033 agtaaaatccatcgattttgattgcgattttacga 17055999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 12513518 - 12513566
Alignment:
Q  17 tctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||| ||||  ||||||||||||||| ||||||| ||||||||||||    
T  12513518 tctacagaagtagttgagtaaaatcctttgattttggttgcgattttac 12513566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 21242919 - 21242859
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||||||| |  ||||||||||| |||| ||| | ||| |||||||||||    
T  21242919 ttatatcgattctacaaaattagttgagtaaaattcttcaattgtaattacgattttacga 21242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 19262214 - 19262090
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||| |||| || ||||    
T  19262214 aatttcttatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacgagtcccgattttgctattcccattcgacttgaag 19262115  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||||| ||||||| ||||| ||||    
T  19262114 taaagttccgatttcgacaaccttg 19262090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 27523984 - 27523881
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||| || ||||||||||||||    
T  27523984 atcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtcccg 27523885  T
Q  111 attt 114  Q
    ||||    
T  27523884 attt 27523881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 1405021 - 1405133
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| | |   || |||||||    
T  1405021 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttatgagtaccgattttgctattcccttttgacctaaattaaagtc 1405120  T
Q  108 ccgattttgacaa 120  Q
     ||||||||||||    
T  1405121 tcgattttgacaa 1405133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 974576 - 974686
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgag-tactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |  ||||||||| ||||||||| || ||||||||||    
T  974576 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtttccgattttgctactccctttcgacttgaagtaaagt 974675  T
Q  107 cccgattttga 117  Q
    |||||| ||||    
T  974676 cccgatattga 974686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 20034110 - 20034004
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    ||||||||| ||||||||| || ||||||||||||||    
T  20034110 atcgattctacaaaagtccttgagtaaaatccttcaattttgattgcgattttacgagtctcgattttgctactccctttcgacttgaagtaaagtcccg 20034011  T
Q  111 attttga 117  Q
    |||||||    
T  20034010 attttga 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 20063961 - 20064078
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||  |  ||||||||| |    
T  20063961 tatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagcc 20064060  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  20064061 ccgattttgacaaccttg 20064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 21869212 - 21869102
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||  |||| ||||||||||||||||| |||||||||||| |||| |  ||||| ||||||||||||| || |||||||||||    
T  21869212 tatatcgattctacaaaagtcattgaataaaatccttcgattttaattgcgattttaagagtcccgatttttctattccctttcgacttgaagtaaagtc 21869113  T
Q  108 ccgattttgac 118  Q
    |||||||||||    
T  21869112 ccgattttgac 21869102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 31237874 - 31237750
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |  ||||| ||||||||||| |    ||||    
T  31237874 aattttctatatcgattttacaaaagtccttgagtaaaatccttcgatattgattgcgattttacgagtcccgattttactattcccttttgaactgaag 31237775  T
Q  101 taaagtcccgattttgacaaacttg 125  Q
    |||||||| ||||||||||| ||||    
T  31237774 taaagtcctgattttgacaatcttg 31237750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 7302023 - 7302129
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |  |||||||||  ||| |||  || ||||||||||||||    
T  7302023 atcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacgagtcccgattttgctaccccccttcaacttgaagtaaagtcccg 7302122  T
Q  111 attttga 117  Q
    |||||||    
T  7302123 attttga 7302129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19245827 - 19245944
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||||||||||  || |||||||||||| |||||||||||||||||||||| |  | ||||||||||||||||||  || |||| ||| ||    
T  19245827 tatatcgattctacaaaagtagttaagtaaaatccttagattttgattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatc 19245926  T
Q  108 ccgattttgacaaacttg 125  Q
    ||||||||||||| ||||    
T  19245927 ccgattttgacaaccttg 19245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 25539043 - 25538924
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||||||||||||||||||||||||  || ||||||||||||  ||||||||||||||||||||||  |  ||||| ||||||||||||| |  || |    
T  25539043 aattttttatatcgattctacaaaagtagttcagtaaaatcctttaattttgattgcgattttacgagacccgatttttctattccctttcgacctgatg 25538944  T
Q  101 taaagtcccgattttgacaa 120  Q
    |||||| |||||||||||||    
T  25538943 taaagtaccgattttgacaa 25538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 30433053 - 30433165
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||| |  ||||| ||||| | ||||| |  ||||||| |||    
T  30433053 tatatcgattctataaaagtccttgagtaaaatcattcgattttgattgcgattttatgagtcccgatttttctattgcttttcgacctgaagtaatgtc 30433152  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  30433153 ccgattttgacaa 30433165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 36430081 - 36430156
Alignment:
Q  3 ttttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaatttt 78  Q
    |||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  36430081 ttttttttatcgattctacaaaaattattgagtaatatccttcgattttgattgcgattttacgagtcccaatttt 36430156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 34578130 - 34578210
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttc 91  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| |  ||||||||| ||||||||    
T  34578130 atcgattctacaaaagtccatgagtaaaatccttcaattttgattgcgattttatgagtcccgattttgctactccctttc 34578210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 8428454 - 8428581
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||||| |||| |||||||||||| |  ||||| |||||||||||||||||||||||||||||  | |  | ||||| ||||||||||||| |   |||     
T  8428454 atttttgatattgattctacaaaaatagttgagcaaaatccttcgattttgattgcgattttagaatttttgatttttctattccctttcgacctaaagc 8428553  T
Q  102 aaagtcccgattttgacaaacttgattc 129  Q
    ||| ||||||||||||||| ||| ||||    
T  8428554 aaaatcccgattttgacaaccttaattc 8428581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 16767017 - 16767079
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||| |||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||    
T  16767017 atttcttatatcgattctataaaagtagttgagtaaaatccttcaattttgattgcgatttta 16767079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 27749396 - 27749281
Alignment:
Q  12 tcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg-tctcgaagtaaagtcccg 110  Q
    |||||||||||||| | |||||||||| || ||| |||| |||||||||||||||| |  | ||||| ||| | ||||||| ||| |||||||| | | |    
T  27749396 tcgattctacaaaaatccttgagtaaactcattcaatttagattgcgattttacgatttgtcattttactaattcctttcgatct-gaagtaaaatactg 27749298  T
Q  111 attttgacaaacttgat 127  Q
    |||||||||||||||||    
T  27749297 attttgacaaacttgat 27749281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 35565854 - 35565788
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgag---taaaatccttcgattttgattgcgattttac 65  Q
    |||| |||||||||||||||||||||  |||||   |||||||||||||||||  ||||||||||||    
T  35565854 atttcttatatcgattctacaaaagtagttgagtaataaaatccttcgattttagttgcgattttac 35565788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15588752 - 15588690
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    ||||| |||||||||| |||| || ||  ||||||||||||||||||||||| |||||||||||    
T  15588752 aatttcttatatcgatcctacgaa-gtaattgagtaaaatccttcgattttggttgcgatttta 15588690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 13502570 - 13502505
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||| |||||||||||| |  |||| ||| ||||||| ||||||||| |||||||||||    
T  13502570 atttcttatatagattctacaaaaatagttgactaatatccttcaattttgattacgattttacga 13502505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 13502603 - 13502570
Alignment:
Q  34 gtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||| ||||||||||||||||||||||||    
T  13502603 gtaaaatccatcgattttgattgcgattttacga 13502570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 27407023 - 27407088
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||| |||| | |||||||  ||||||||||| ||| ||||||||||||||| ||||||    
T  27407023 atttcttatattgattatccaaaagtagttgagtaaaattcttggattttgattgcgatattacga 27407088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 29661101 - 29661166
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||||||| ||||||||||  || | ||||| ||||||||||| |||||| ||||||||    
T  29661101 atttcttatatcgatactacaaaagtagtttaataaaaaccttcgattttaattgcggttttacga 29661166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 15627991 - 15628039
Alignment:
Q  17 tctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||||||||  |||||||||| ||||||||||||||| | |||||||    
T  15627991 tctacaaaagtagttgagtaaaaaccttcgattttgatttccattttac 15628039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 17811579 - 17811698
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |  ||||||||||||||||| | |  ||||    
T  17811579 aattttctatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacgaatcccgattttgctattcccttttgacctgaag 17811678  T
Q  101 taaagtcccgattttgacaa 120  Q
    ||||||||||||||||||||    
T  17811679 taaagtcccgattttgacaa 17811698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 4247588 - 4247712
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagt 101  Q
    |||| ||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| | | ||||||  |||||||||||| || |||||    
T  4247588 atttcttatatcgattctacaaaaatccttgagtaaaatcctttgaatttgattgcgattttacgaatcccaatttttgtattccctttcgacttgaagt 4247687  T
Q  102 aaagtcccgattttgacaaacttga 126  Q
    |||||||| |||||||||| |||||    
T  4247688 aaagtcccaattttgacaatcttga 4247712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 25842619 - 25842513
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |  ||||||||| ||||||||| || |||||||||||||     
T  25842619 atcgattctacaaaagttcatgagtaaaatcctccaattttgattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtccca 25842520  T
Q  111 attttga 117  Q
    |||||||    
T  25842519 attttga 25842513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 8304324 - 8304436
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    ||||||||| || |||||| || |||||||||||    
T  8304324 tatatcaattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttacgagtcgcgattttgctactctctttcgacttgaagtaaagtc 8304423  T
Q  108 ccgattttgacaa 120  Q
     ||||||||||||    
T  8304424 tcgattttgacaa 8304436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 24989664 - 24989553
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |  |||||| |||||||||||| |   ||||||||||    
T  24989664 tatatcgattctacaaaagtcctt-agtaaaatccttcgattttgattgccattttacgagtcccgattttgttattccctttcgacctaaagtaaagtc 24989566  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  24989565 ccgattttgacaa 24989553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 5715523 - 5715631
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |  ||||| ||||| ||||||| |    |||||||||    
T  5715523 tatatcgattctacaaaagtccttgagtaaaatccctcgattttgattgcgattttacgagtcccgatttttctatttcctttcgac----agtaaagtc 5715618  T
Q  108 ccgattttgacaa 120  Q
    |||||||||||||    
T  5715619 ccgattttgacaa 5715631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 20570783 - 20570664
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||   ||||||| |||||||||||  |  ||||    
T  20570783 aatttcttatatcgattctacaaaagtccttgagtaaaatctttcaattttgattgcgattttatgagtctcaattttgttattccctttcaacctgaag 20570684  T
Q  101 taaagtcccgattttgacaa 120  Q
    || |||||||||||||||||    
T  20570683 tagagtcccgattttgacaa 20570664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5058760 - 5058878
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg-tctcgaa 99  Q
    |||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| ||||||||| | |  ||||||||||||||||| | ||| |||    
T  5058760 aattttttatatcgattc-acaaaattccttgattaaaatccttcgattttgattgcaattttacgaattccgattttgctattcccttttgatct-gaa 5058857  T
Q  100 gtaaagtcccgattttgacaa 120  Q
    |||||||||||||||||||||    
T  5058858 gtaaagtcccgattttgacaa 5058878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 1981214 - 1981107
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||| ||||  |||||||||  |||||||||||||||| ||||||||||||| | |||||| ||| ||||||||| || |||||||||||    
T  1981214 tatatcgattctactaaagaccttgagtaa--tccttcgattttgattacgattttacgagttccaatttttctaatccctttcgacttgaagtaaagtc 1981117  T
Q  108 ccgattttga 117  Q
    ||||||||||    
T  1981116 ccgattttga 1981107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 44944743 - 44944624
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg-tctcgaa 99  Q
    ||||| ||||||||||||||||||||| ||| ||||||||  ||||||||| ||||||||||||||||| |    ||||||||| ||||||| ||| |||    
T  44944743 aatttcttatatcgattctacaaaagtccttaagtaaaattgttcgattttaattgcgattttacgagtcccgcatttgctatttcctttcgatct-gaa 44944645  T
Q  100 gtaaagtcccgattttgacaa 120  Q
    |||||||||||||||||||||    
T  44944644 gtaaagtcccgattttgacaa 44944624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9685192 - 9685085
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaag 100  Q
    |||||| || |||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||  | ||||||||||||| ||||| |  ||||    
T  9685192 aattttctaaatcgattctataaaagtcctcgagtaaaatccttcgattttaattgcgattttacgagtcttgattttgctattccttttcgaccagaag 9685093  T
Q  101 taaagtcc 108  Q
    ||||||||    
T  9685092 taaagtcc 9685085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 24725363 - 24725280
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttc 91  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||| | ||| |||||||| ||||||    
T  24725363 tatatcgattctacaaaagtccttgagtaaaatcctttgattttgattgcgattttaaaagttccaatattgctatttcctttc 24725280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 23618317 - 23618211
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||  |||| |  ||||||||| ||||||||  ||  ||||||||||  |    
T  23618317 atcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttcggagtcccgattttgctactccctttcaacttaaagtaaagtcttg 23618218  T
Q  111 attttga 117  Q
    |||||||    
T  23618217 attttga 23618211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39182387 - 39182453
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  39182387 aatttcttatatcgattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacga 39182453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26565445 - 26565380
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  26565445 attttttatattgattctacaaaagtagttgagtaaaatccttcgattttgattacgattttacga 26565380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 27221655 - 27221762
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcg-tctcgaagtaaagtccc 109  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||| | |  |||||||||| | ||||||  ||  ||||||||||||    
T  27221655 atcgattctacaaaagtctccgagtaaaatccttcgattttgattgcgattttacgaatcccgattttgctatactctttcgacctaaaagtaaagtccc 27221754  T
Q  110 gattttga 117  Q
    ||||||||    
T  27221755 gattttga 27221762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 11326521 - 11326639
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    ||||| ||||| |||||||| |||||||||||| |||| |||||||||| ||||||| |||| | ||||||||||||| |||||  |  ||| ||||||     
T  11326521 tatattgattccacaaaagtccttgagtaaaatacttcaattttgattgtgattttaagagtcccaattttgctattctctttccacctgaaataaagtt 11326620  T
Q  108 ccgattttgacaaacttga 126  Q
    | ||||||||||| |||||    
T  11326621 ctgattttgacaaccttga 11326639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8329941 - 8329876
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||| |||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  8329941 atttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgattttacga 8329876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14055488 - 14055552
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    ||||| |||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  14055488 aatttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 14055552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14365516 - 14365580
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    ||||| |||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  14365516 aatttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 14365580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 4574968 - 4575051
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttc 91  Q
    ||||||||||||||||||||  ||||||| ||| ||| |||||||||||||||||||||| |  | ||||| ||||||||||||    
T  4574968 tatatcgattctacaaaagtagttgagtagaattctttgattttgattgcgattttacgatttttgattttactattccctttc 4575051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 1977781 - 1977845
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||    
T  1977781 atttcttatatcgattctaaaaaa-taattgagtaaaatccttcgattttgattgcgattttacga 1977845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8343699 - 8343634
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||||||||||||||  ||||||||    
T  8343699 attttttatatcaattctacaaaagtagttgagtaaaatacttcgattttgattgcatttttacga 8343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8346428 - 8346363
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| ||||||| |||||||||||||  ||||||||||||||| ||||||||||||||| ||||||    
T  8346428 atttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgatattacga 8346363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 8572375 - 8572491
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||| |||||||||| || ||||| ||| ||| ||||||||||||||||| |||| |||| | ||| || ||||||||||||| || ||  |||||||    
T  8572375 tatatcaattctacaaatgtccttgattaacatctttcgattttgattgcga-tttaagagtcccaatattactattccctttcgacttgagataaagtc 8572473  T
Q  108 ccgattttgacaaacttg 125  Q
    || |||||||||| ||||    
T  8572474 ccaattttgacaaccttg 8572491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 8329876 - 8329814
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||| ||||||| |||||||||||||  |||||||||||||||| ||||||||||| ||||||    
T  8329876 atttcttatatcaattctacaaaagtagttgagtaaaatccttcaattttgattgcaatttta 8329814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 21846344 - 21846282
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||| |||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||    
T  21846344 atttcttatatcgattctataaaagtagttgattaaaatccttcgattttggttgcgatttta 21846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 22687164 - 22687099
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||| |||||||||||||||||||||  ||||||||||| |||| |||||| ||| ||||||||||    
T  22687164 atttcttatatcgattctacaaaagtagttgagtaaaattcttcaattttggttgtgattttacga 22687099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 26340264 - 26340212
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgat 60  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  26340264 ttatatcgattctataaaagtt-ttgagtaaaattcttcgattttgattgcgat 26340212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 21157584 - 21157525
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||||||||||||  |||| ||||||||||| |||||||||| ||||||||||    
T  21157584 tatatagattctacaaaagtagttgaataaaatccttcaattttgattgagattttacga 21157525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7730257 - 7730191
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| ||||||| ||| |||||||||  |||||||||| | |||||||||| ||||||||||||||    
T  7730257 aatttcttatatcaattatacaaaagtagttgagtaaaaccattcgattttggttgcgattttacga 7730191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 10285759 - 10285677
Alignment:
Q  43 ttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaaacttg 125  Q
    ||||||||||||||||||||||||| |  | ||||| || ||| |||||| |  |||||||| ||||||||||||||| ||||    
T  10285759 ttcgattttgattgcgattttacgattgttgatttttctcttctctttcgacctgaagtaaaatcccgattttgacaaccttg 10285677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 8629617 - 8629536
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttc 91  Q
    |||||||||||||||| | |||||||||||  ||  |||| |||||||| ||||| |||| | |||||| ||||||||||||    
T  8629617 tatcgattctacaaaattccttgagtaaaactctctgattgtgattgcgtttttatgagtcccaattttactattccctttc 8629536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 26281251 - 26281169
Alignment:
Q  36 aaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttgacaa 120  Q
    |||||||||| ||||||||||||||||||||| | || | ||||||||||| ||||| |   ||||||||||| |||||||||||    
T  26281251 aaaatccttcaattttgattgcgattttacga-tcctga-tttgctattccttttcgacctaaagtaaagtcctgattttgacaa 26281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 30294486 - 30294538
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattt 62  Q
    ||||||||||| ||||||  || |||||||||||||||||||||||| |||||    
T  30294486 tatcgattctataaaagtagttaagtaaaatccttcgattttgattgtgattt 30294538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 8346363 - 8346308
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgc 57  Q
    |||| ||||||| |||||| ||||||  ||||||||||||||||||||||| ||||    
T  8346363 atttcttatatcaattctataaaagtagttgagtaaaatccttcgattttgtttgc 8346308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 17741886 - 17741941
Alignment:
Q  12 tcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||| ||||||  || ||||||||||||| ||||||||||| |||||||||    
T  17741886 tcgattctaaaaaagtagttaagtaaaatccttcaattttgattgcaattttacga 17741941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27509310 - 27509260
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgatttt 51  Q
    ||||| |||||||||||||| ||||||  |||||||||||||||| |||||    
T  27509310 aatttcttatatcgattctataaaagtagttgagtaaaatccttcaatttt 27509260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 8254039 - 8253991
Alignment:
Q  44 tcgattttgattgcgattttacgagtactaattttgctattccctttcg 92  Q
    ||||||||||||||||||||||||||    ||||||||| |||||||||    
T  8254039 tcgattttgattgcgattttacgagtctcgattttgctactccctttcg 8253991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 8679 - 8788
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||| |  |||||| |||||||||||| |  |||||||||||    
T  8679 tatatcgattctacgaaaatacttgagtaaaatccttcaattttgattgcgattttacgagttccgattttgttattccctttcgacctgaagtaaagtc 8778  T
Q  108 ccgattttga 117  Q
    ||||||||||    
T  8779 ccgattttga 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 56316 - 56199
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||    ||||||||||||||||||| |  |||||||||||    
T  56316 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttagatgtctcgattttgctattccctttcgacctgaagtaaagtc 56217  T
Q  108 ccgattttgacaaacttg 125  Q
     |||||||||||| ||||    
T  56216 tcgattttgacaaccttg 56199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 14814 - 14708
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |  ||||||||| ||| ||||| || ||||||||| ||||    
T  14814 atcgattctacaaaagtctttgaataaaatccttcgattttgattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaagccccg 14715  T
Q  111 attttga 117  Q
    |||||||    
T  14714 attttga 14708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 38414 - 38301
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    ||||||||||||||||| | |||||||||||||||||| | |||||| ||||||||||| |  ||||||||||| ||||||| || ||||||||||||||    
T  38414 atcgattctacaaaagtccatgagtaaaatccttcgatct-gattgcaattttacgagtcccgattttgctatttcctttcgacttgaagtaaagtcccg 38316  T
Q  111 attttgacaaacttg 125  Q
    |||||||||| ||||    
T  38315 attttgacaaccttg 38301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 76196 - 76081
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccg 110  Q
    |||||||||||||||||  ||||||||||||||||||| || ||||| ||||||||||| |    ||||||||| ||||||| || ||||||||||||||    
T  76196 atcgattctacaaaagtctttgagtaaaatccttcgatctt-attgcaattttacgagtcccgggtttgctatttcctttcgactggaagtaaagtcccg 76098  T
Q  111 attttgacaaacttgat 127  Q
    |||||||||| ||||||    
T  76097 attttgacaaccttgat 76081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 8394 - 8514
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtc 107  Q
    |||||| |||||||| || | ||||||||||||||||||||||||| ||| |||||| |||| | |||||| ||| ||||||||| ||  ||||||| ||    
T  8394 tatatcaattctacacaactccttgagtaaaatccttcgattttgactgcaattttatgagtcccaattttactactccctttcgacttaaagtaaactc 8493  T
Q  108 ccgattttgacaaacttgatt 128  Q
    |||||||||| || |||||||    
T  8494 ccgattttgataaccttgatt 8514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 81 - 175
Alignment:
Q  23 aaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagtcccgattttga 117  Q
    ||||| ||||||||||||||||||||||| ||| | ||||||||||| |  ||||||||| ||||||| | || |||||||||||||||||||||    
T  81 aaagtccttgagtaaaatccttcgattttaattacaattttacgagtcccgattttgctactcccttttgacttgaagtaaagtcccgattttga 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 133003 - 132945
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagt 69  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  133003 atcgattctacaaaagtccttgaggaaaatccttcgattttgattgcgattttacgagt 132945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 145825 - 145885
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||    
T  145825 ttatatcgattctacaaaagtaagtgagtaaaatccttcgattttgattgctattttacga 145885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 93602 - 93539
Alignment:
Q  2 attttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||| |||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  93602 atttattatatcgattctacaaaagtagttgaataaaatccttcgattttgattacgattttac 93539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 93635 - 93602
Alignment:
Q  34 gtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||| ||||||||||||||||||||||||    
T  93635 gtaaaatccatcgattttgattgcgattttacga 93602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 7346 - 7268
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattcc 86  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||    |||||||||||||    
T  7346 tatatctattcaacaaaagtacttgagtaaaatccttcgattttgattacgattttacaagtctcgattttgctattcc 7268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 33175 - 33233
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttac 65  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||    
T  33175 ttatatcgattctacaaaagtaagtgagtaaaattcttcgattttgattgcgattttac 33233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 8851 - 8794
Alignment:
Q  7 ttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  8851 ttatatctattctacaaaagtagttgagtaaaatccttcgattttgattacgatttta 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 901 - 990
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattcccttt 90  Q
    ||||| |||||||  ||||||||||||  ||||||||||| |||||||||||||||| ||||||||| |   ||||||||| ||||||||    
T  901 aatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctcttcccttt 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 24627 - 24722
Alignment:
Q  11 atcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacgagtactaattttgctattccctttcgtctcgaagtaaagt 106  Q
    |||||||||||||||    |||||||||||| || |||||||||| | ||||||||||| |  ||||||||| ||||||||| || ||||||||||    
T  24627 atcgattctacaaaaaaatttgagtaaaatcttttgattttgattacaattttacgagtcccgattttgctactccctttcgacttgaagtaaagt 24722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 61205 - 61146
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||||||    
T  61205 tatatcgattctacaaaagtagttaagtaaaattcttcgattttgattgtgattttacga 61146  T

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Target: scaffold0048; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 48551 - 48497
Alignment:
Q  10 tatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    ||||||||||||||||||  || |||||||||||||||||||||||| |||||||    
T  48551 tatcgattctacaaaagtagttaagtaaaatccttcgattttgattgagatttta 48497  T

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Target: scaffold0510 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 101 - 36
Alignment:
Q  1 aattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttacga 67  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||    
T  101 aatttcttatatcgattctacaaa-gtagttgagtaaaatccttcgattttggtttcgattttacga 36  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 142867 - 142923
Alignment:
Q  8 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 64  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||| ||||||||||||    
T  142867 tatatctattctacaaaactccttgagtaaaatccttcaattttaattgcgatttta 142923  T

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