View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_high_37 (Length: 263)
Name: NF21266_high_37
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 1864531 - 1864780
Alignment:
| Q |
4 |
tccatctctgtcgttataattgctatggtttaatatttggactatcatttttaagaggttgataaataaa------cacacacacataagttgcaattga |
97 |
Q |
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| T |
1864531 |
tccatcactgcctttataattgctatggtttaatatttggactatcatttttaagaggttgataaataaaaacacacacacacacacaagttgcaattga |
1864630 |
T |
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| Q |
98 |
taatttaatttatagactttcaatgtatatccatcccaacgatttttacatttttgttataataaaaaccgcaattgttttattaagcttctttttcctt |
197 |
Q |
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| T |
1864631 |
taatttaatttatagactttcaatgtatatccatcccaacgatttttacatttttgttataataaaaaccgcaatagttttattaagtttctttttcctt |
1864730 |
T |
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| Q |
198 |
ctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgagttctt |
247 |
Q |
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| T |
1864731 |
ctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgagttctt |
1864780 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 35441617 - 35441574
Alignment:
| Q |
204 |
tttttagtttggcaaaagcttaaagaagaaaatcctgagttctt |
247 |
Q |
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| T |
35441617 |
ttttcagtttggcaaaagcttaatgaacaaaatcctgagttctt |
35441574 |
T |
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