View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_39 (Length: 259)

Name: NF21266_high_39
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_39
NF21266_high_39
[»] chr7 (8 HSPs)
chr7 (2-242)||(3389943-3390183)
chr7 (138-233)||(3402908-3403002)
chr7 (2-110)||(3403358-3403466)
chr7 (138-233)||(3369627-3369724)
chr7 (144-233)||(3298700-3298789)
chr7 (149-229)||(3360118-3360198)
chr7 (149-230)||(3348294-3348375)
chr7 (2-110)||(3369730-3369838)
[»] chr2 (1 HSPs)
chr2 (149-214)||(23994017-23994082)
[»] chr6 (1 HSPs)
chr6 (2-43)||(20720368-20720409)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 3390183 - 3389943
Alignment:
Q  2 aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3390183 aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccactttccca 3390084  T
Q  102 agattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390083 agattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttc 3389984  T
Q  202 cacaaggagatgctataatgattaaggttggtggtatacat 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3389983 cacaaggagatgctataatgattaaggttggtggtatacat 3389943  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 3403002 - 3402908
Alignment:
Q  138 tgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt 233  Q
    ||||| ||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  3403002 tgaaaaattgtaaaattttatc-agggatcgaacatgttggaggaaatatgtttgaatgtgtgccacaaggagatgctataatgcttaaggttggt 3402908  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 3403466 - 3403358
Alignment:
Q  2 aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |  |||||| ||||| ||| ||||||||||||  ||||||| |||    
T  3403466 aatcaattttgatctcccacaagtgattgaacatgcaccaccctctccaggtaaatgcttgatcgcatctgaaagtttatatttagttgccactttccca 3403367  T
Q  102 agattattt 110  Q
    |||| ||||    
T  3403366 agataattt 3403358  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 3369724 - 3369627
Alignment:
Q  138 tgaaatattgtcaaatt--ttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt 233  Q
    ||||| |||||||||||  || ||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  3369724 tgaaaaattgtcaaattctttttttagggatcgagtattttggaggaaatatgtttgaatctgttccacaaggagatgctataatgcttaaggttggt 3369627  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 3298789 - 3298700
Alignment:
Q  144 attgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt 233  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||||  || |||||||||||||||| |||||  |||||||||||    
T  3298789 attgccaaattttatttagggattgaacatgttggaggaagtatgtttgagagtattccacaaggagatgccataatacttaaggttggt 3298700  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 3360198 - 3360118
Alignment:
Q  149 caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggt 229  Q
    ||||||| ||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  3360198 caaatttcatttaggcattgaatatgttggaggaaatatgtttgaaagtgttccacaaggagatgtcataatgattaaggt 3360118  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 3348375 - 3348294
Alignment:
Q  149 caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggtt 230  Q
    ||||||| |||||||||| || |||||||||||||  ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  3348375 caaatttcatttagggattgagcatgttggaggaagcatgtttgaaagtgttccacaaggagatgccataatgcttaaggtt 3348294  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 3369838 - 3369730
Alignment:
Q  2 aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca 101  Q
    |||||| ||||| |||||||||||||||||| |||||||||||| ||  ||| ||  ||||||  ||||| ||||||| |||||||| ||||||||  ||    
T  3369838 aatcaactttgacctcccacaagtgattgaaaatgcaccaccctatcatggtaatcgtttgatagcatcttaaattttgtatttagtaaccactttctca 3369739  T
Q  102 agattattt 110  Q
    |||||||||    
T  3369738 agattattt 3369730  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 23994017 - 23994082
Alignment:
Q  149 caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgc 214  Q
    ||||||| | ||||||||| ||||| |||||||||  ||||||||| |||||||||||||||||||    
T  23994017 caaatttcaattagggatccaacatattggaggaagcatgtttgaaagtgttccacaaggagatgc 23994082  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 20720409 - 20720368
Alignment:
Q  2 aatcaattttgatctcccacaagtgattgaacatgcaccacc 43  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  20720409 aatcaattttgacctaccacaagtgattgaaaatgcaccacc 20720368  T

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