View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_41 (Length: 251)

Name: NF21266_high_41
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_41
NF21266_high_41
[»] chr1 (3 HSPs)
chr1 (12-251)||(52243383-52243622)
chr1 (15-132)||(33677638-33677755)
chr1 (188-248)||(24598924-24598983)
[»] chr4 (6 HSPs)
chr4 (22-194)||(48825306-48825477)
chr4 (22-207)||(53146932-53147114)
chr4 (47-166)||(55416901-55417020)
chr4 (66-167)||(26698102-26698203)
chr4 (14-129)||(31160930-31161047)
chr4 (78-145)||(48988969-48989036)
[»] chr2 (3 HSPs)
chr2 (22-181)||(9145585-9145744)
chr2 (66-167)||(26159642-26159743)
chr2 (66-113)||(27001281-27001328)
[»] chr5 (3 HSPs)
chr5 (51-251)||(35562516-35562716)
chr5 (12-194)||(27626109-27626286)
chr5 (78-130)||(36274880-36274932)
[»] chr8 (3 HSPs)
chr8 (22-167)||(13318027-13318172)
chr8 (66-127)||(30541914-30541975)
chr8 (94-138)||(36019029-36019073)
[»] chr6 (2 HSPs)
chr6 (14-156)||(12250876-12251018)
chr6 (66-113)||(34703322-34703369)
[»] chr3 (2 HSPs)
chr3 (66-138)||(3452247-3452319)
chr3 (45-106)||(21393936-21393997)
[»] chr7 (2 HSPs)
chr7 (44-132)||(34257588-34257676)
chr7 (70-127)||(6561153-6561210)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 52243383 - 52243622
Alignment:
Q  12 atgaatgctggagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatccta 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52243383 atgaatgctagagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctggtggctgaaggcaaatcatccta 52243482  T
Q  112 attttacatttaattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttcactctcttttttgtgtgttttagcgtgctcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52243483 attttacatttaattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttcactctcttttttgtgtgttttagcgtgctcc 52243582  T
Q  212 tttgtggctataatgtttaatttcttgttggtaacctgat 251  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  52243583 tttgtggctataatgtttaatttcttgttggtaagctgat 52243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 33677638 - 33677755
Alignment:
Q  15 aatgctggagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaatt 114  Q
    |||||| ||||||| ||||||||||||  ||| || | ||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||| |||||    
T  33677638 aatgctagagtttttcaacaaaaggggaattcaatcattcagcttatggataaaattaagctccaatccttctaatggttgaagacaaatcatcttaatt 33677737  T
Q  115 ttacatttaattaccaca 132  Q
    || | |||||||| ||||    
T  33677738 ttgcttttaattatcaca 33677755  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 24598983 - 24598924
Alignment:
Q  188 tttttgtgtgttttagcgtgctcctttgtggctataatgtttaatttcttgttggtaacct 248  Q
    ||||||||| |||||||||||   ||||||||| ||||| |||||||||| ||||||||||    
T  24598983 tttttgtgt-ttttagcgtgcctttttgtggctgtaatgcttaatttctttttggtaacct 24598924  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 48825477 - 48825306
Alignment:
Q  22 gagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatt 121  Q
    ||||||| ||| ||||||||||||||||||||||||||| | ||||||||||| | ||||| || | |||| |||||||||||||||||||||||   ||    
T  48825477 gagtttttcaataaaaggggctttctattaatcagcttgag-acaaaattaaggtacaatctttttggtggttgaaggcaaatcatcctaattttgtttt 48825379  T
Q  122 taattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttcactctcttttttgt 194  Q
    |||||||||||  | ||  |||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  48825378 taattaccacatgtcgtggcttaatccccttttatgtttgggagttcataattagtttcaatctattttttgt 48825306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 53147114 - 53146932
Alignment:
Q  22 gagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatt 121  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||  |||| |||  |||  |||||||||| ||||||| | ||    
T  53147114 gagttttccaacaaaatgggctttctattaatcagcatgtggacaaaattaaactacaatttttctggtgattga--gcaaatcatcataattttgcttt 53147017  T
Q  122 taattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttcactctcttttttgtgtgttttagcgtg 207  Q
    ||||||||| |  ||||  |||||| | ||||||||| |||||||||| ||||||||||| | | |||||||||| ||||||||||    
T  53147016 taattaccatatgtggtggcttaatcctcttttatgtttgggagttcaaaattagtttcaatat-ttttttgtgttttttagcgtg 53146932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 55416901 - 55417020
Alignment:
Q  47 tattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggtaacttaat 146  Q
    |||| |||||||| | || ||||||||||| |||| ||||| |||| ||||||||||||||||||||||| | |||||||||||||||||||  ||||||    
T  55416901 tattcatcagcttatagataaaattaagctacaattcttctggtggttgaaggcaaatcatcctaattttgcttttaattaccacacatggtggcttaat 55417000  T
Q  147 tcccttttatgtctgggagt 166  Q
    || ||| | ||| |||||||    
T  55417001 tctcttgtttgtttgggagt 55417020  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 26698102 - 26698203
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggtaacttaattcccttttatgtctgggag 165  Q
    ||||||||||| |||||||||| |||| ||||| ||||||||||||||||| | |||||||| ||||  ||||  |||||| | ||||||||| ||||||    
T  26698102 aaaattaagcttcaatccttctggtggttgaagccaaatcatcctaattttgcttttaattatcacatgtggtggcttaatcctcttttatgtttgggag 26698201  T
Q  166 tt 167  Q
    ||    
T  26698202 tt 26698203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 31161047 - 31160930
Alignment:
Q  14 gaatgctggagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaag--gcaaatcatccta 111  Q
    ||||||| ||||||| ||||||||||||  |||||| ||||| ||| | || ||||||||||||||| |||| | |||| |||||  | |||||||||||    
T  31161047 gaatgctagagtttttcaacaaaaggggaattctatcaatcaacttatagataaaattaagctccaacccttatggtggttgaaggtgtaaatcatccta 31160948  T
Q  112 attttacatttaattacc 129  Q
    ||||| | ||||||||||    
T  31160947 attttgcttttaattacc 31160930  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 48988969 - 48989036
Alignment:
Q  78 caatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggtaacttaa 145  Q
    ||||| |||| |||| ||||||| ||||||||||||||| | ||| ||||||| ||||||| ||||||    
T  48988969 caatcattctggtggttgaaggccaatcatcctaattttgcttttcattaccatacatggtgacttaa 48989036  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 9145585 - 9145744
Alignment:
Q  22 gagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatt 121  Q
    |||| |||||||||| ||||  |||||||||||||||| | || ||||||||||||||||| || | |||| ||||||||||||| ||||||||| | ||    
T  9145585 gagtcttccaacaaacggggaattctattaatcagcttctagataaaattaagctccaatctttttggtggttgaaggcaaatcaccctaattttgcttt 9145684  T
Q  122 taattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttca 181  Q
    |||||| |||| |||||  |||||| | ||||||||| ||||||||  || |||||||||    
T  9145685 taattagcacaaatggtggcttaatcctcttttatgtttgggagttgttacttagtttca 9145744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 26159743 - 26159642
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggtaacttaattcccttttatgtctgggag 165  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||  ||||  |||||| | ||||||||| || |||    
T  26159743 aaaattaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaatcctcttttatgtttgagag 26159644  T
Q  166 tt 167  Q
    ||    
T  26159643 tt 26159642  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 27001281 - 27001328
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaat 113  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  27001281 aaaattaagcttcaaaccttctagtggttgaaggcaaatcatcataat 27001328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 35562716 - 35562516
Alignment:
Q  51 aatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggtaacttaattccc 150  Q
    ||||| |||||||||||||||||||| |||||||||  | ||||||| | |||||||||||||||| | ||||||||||||   | || | ||||| |||    
T  35562716 aatcaacttgtggacaaaattaagctacaatccttccgg-ggctgaaagaaaatcatcctaattttgcttttaattaccacgtgtagtgatttaatcccc 35562618  T
Q  151 ttttatgtctgggagttcataattagtttcactctcttttttgtgtgttttagcgtgc-tcctttgtggctataatgtttaatttcttgttggtaacctg 249  Q
    |||||||| || |||||||||||||||||||   | |||||||||| || || ||||| |  | ||||||||||| |  |||||||||||||||||| ||    
T  35562617 ttttatgtttgagagttcataattagtttcaaattattttttgtgttttataccgtgcatgttatgtggctataacgcgtaatttcttgttggtaacgtg 35562518  T
Q  250 at 251  Q
    ||    
T  35562517 at 35562516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 27626286 - 27626109
Alignment:
Q  12 atgaatgctggagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatccta 111  Q
    ||||||||| || |||||||||||||  |  |||||| |||||||||||| || ||| ||||||| ||||  ||||  |||   ||| |||||||| |||    
T  27626286 atgaatgctagaattttccaacaaaaatgt-tttctaataatcagcttgtagataaa-ttaagctacaatatttctgatgg---aagacaaatcattcta 27626192  T
Q  112 attttacatttaattaccacacatggtaacttaattcccttttatgtctgggagttcataattagtttcactctcttttttgt 194  Q
    ||||| | |||||||| || |  ||||| ||||||  |||||||||| ||||||||||||||||| |||| ||||||||||||    
T  27626191 attttgcttttaattagcatatgtggtagcttaatctccttttatgtttgggagttcataattaggttcagtctcttttttgt 27626109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 36274932 - 36274880
Alignment:
Q  78 caatccttctagtggctgaaggcaaatcatcctaattttacatttaattacca 130  Q
    |||||||||| ||| ||||||||| ||||||||| |||| | |||||||||||    
T  36274932 caatccttctggtgactgaaggcagatcatcctagttttgcttttaattacca 36274880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 13318172 - 13318027
Alignment:
Q  22 gagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatt 121  Q
    |||| ||||||||||| ||   ||||||| ||||||||   |||||||||||||  ||||| |||| |||||||  ||||||||||||||||||| | ||    
T  13318172 gagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggcaaatcatcctaattttgcttt 13318073  T
Q  122 taattaccacacatggtaacttaattcccttttatgtctgggagtt 167  Q
    |||||||||||||||||  |||||| | ||| | ||| ||||||||    
T  13318072 taattaccacacatggtggcttaatcctcttctgtgtttgggagtt 13318027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 30541914 - 30541975
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaatta 127  Q
    |||||||||||||||||||||| |||| ||||  ||||||||||||||||| | ||||||||    
T  30541914 aaaattaagctccaatccttcttgtggttgaaaacaaatcatcctaattttgcttttaatta 30541975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 36019029 - 36019073
Alignment:
Q  94 tgaaggcaaatcatcctaattttacatttaattaccacacatggt 138  Q
    ||||||||||||||||||| ||| | |||||||| ||||||||||    
T  36019029 tgaaggcaaatcatcctaactttgcttttaattatcacacatggt 36019073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 12250876 - 12251018
Alignment:
Q  14 gaatgctggagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaat 113  Q
    ||||||| ||||||| ||||||||| ||  ||| || | ||| ||| | || ||| ||||||||||||||||||||||| |||| |||||||||| ||||    
T  12250876 gaatgctagagtttttcaacaaaagaggaattcaatcattcaacttttagataaagttaagctccaatccttctagtggttgaaagcaaatcatcataat 12250975  T
Q  114 tttacatttaattaccacacatggtaacttaattcccttttat 156  Q
    ||| | |||||||| ||||  ||||  |||||| |||||||||    
T  12250976 tttgcttttaattatcacatgtggtggcttaatccccttttat 12251018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 34703322 - 34703369
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaat 113  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  34703322 aaaattaagcttcaaaccttctagtggttgaaggcaaatcatcataat 34703369  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 3452319 - 3452247
Alignment:
Q  66 aaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccacacatggt 138  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||||   |||||||| ||||||||||    
T  3452319 aaaattaagctacaatccttctagtggttgaaggcaaaccatcctaattttgtttttaattatcacacatggt 3452247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 21393997 - 21393936
Alignment:
Q  45 tctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatca 106  Q
    ||||||||||| ||| | ||  |||||||||| |||||||||| |||| |||||||||||||    
T  21393997 tctattaatcaacttatagatgaaattaagcttcaatccttctggtggttgaaggcaaatca 21393936  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 34257588 - 34257676
Alignment:
Q  44 ttctattaatcagcttgtggacaaaattaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaattaccaca 132  Q
    |||||||||||| ||| | |||||||||||||| || || |||| ||||  |||||||||||||||||| ||||| |||||||| ||||    
T  34257588 ttctattaatcaacttatagacaaaattaagcttcagtcgttctggtggtcgaaggcaaatcatcctaactttacttttaattatcaca 34257676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 6561210 - 6561153
Alignment:
Q  70 ttaagctccaatccttctagtggctgaaggcaaatcatcctaattttacatttaatta 127  Q
    |||||||||||||||||| |||| ||||||||||||||  ||||||| | ||||||||    
T  6561210 ttaagctccaatccttctggtggttgaaggcaaatcattttaatttttcttttaatta 6561153  T

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