View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_high_42 (Length: 250)
Name: NF21266_high_42
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2672532 - 2672291
Alignment:
| Q |
1 |
aaaagttaagtaagttaccaggtagctaaagttaattagattggattattcaaatgtgattgtgaaaggagtgatcgtagatgttactaaaatgtttgcc |
100 |
Q |
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| T |
2672532 |
aaaagttaagtaagttaccaggtagctaaagttaattagattggattattcaaatgtgattgtgaaaggagtgatcgtagatgttactaaaatgtttgcc |
2672433 |
T |
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| Q |
101 |
aatactaatcaattaaaattgaacaatttatacatagaaatagtaagtaaggattgtttggccttggttgtgatacacgtgtcacttgagtgacacgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2672432 |
aatactaatcaattaaaattgaacaatttatacatagaaatagtaagtaaggattgtttggccttggttgtgatacacgtgtcacttgagtgacacgtca |
2672333 |
T |
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| Q |
201 |
gctatcttgtttggcttatgttatagagtgcccacctttgct |
242 |
Q |
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| T |
2672332 |
gctatcttgtttggcttatgttatagagtgcccacctttgct |
2672291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 2690288 - 2690183
Alignment:
| Q |
115 |
aaaattgaacaatttatacatagaaatagtaagtaaggattgtttggccttggttgtgatacacgtgtcacttgagtgacacgtcagctatcttgtttgg |
214 |
Q |
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| T |
2690288 |
aaaattgaacaatttatacataggaatggtacg----gtttgtttggtcttggttgtgcagcacgtgtcatttgagtgacacgtcagaatgctagtttgg |
2690193 |
T |
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| Q |
215 |
cttatgttat |
224 |
Q |
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|||||||||| |
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| T |
2690192 |
cttatgttat |
2690183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 2690422 - 2690353
Alignment:
| Q |
11 |
taagttaccaggtagctaaagttaatta----gattggattattcaaatgtgattgtgaaaggagtgatc |
76 |
Q |
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||||||||||| || ||||||||||||| ||||| |||||||||||||||||| |||||||||||| |
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| T |
2690422 |
taagttaccagatacctaaagttaattaattggattgaattattcaaatgtgattggaaaaggagtgatc |
2690353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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