View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_46 (Length: 245)

Name: NF21266_high_46
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_46
NF21266_high_46
[»] chr5 (16 HSPs)
chr5 (1-80)||(43235018-43235097)
chr5 (95-224)||(43233589-43233700)
chr5 (95-148)||(21256433-21256486)
chr5 (95-148)||(41949638-41949691)
chr5 (1-80)||(21059057-21059135)
chr5 (92-148)||(17823335-17823391)
chr5 (1-65)||(18051433-18051497)
chr5 (1-73)||(18843872-18843944)
chr5 (1-74)||(41688566-41688638)
chr5 (1-74)||(27340087-27340163)
chr5 (92-148)||(15543950-15544006)
chr5 (1-68)||(19579104-19579172)
chr5 (1-80)||(23172328-23172407)
chr5 (1-66)||(20321106-20321172)
chr5 (1-62)||(38158164-38158224)
chr5 (73-101)||(43234672-43234700)
[»] chr6 (13 HSPs)
chr6 (1-80)||(26053196-26053275)
chr6 (1-80)||(26073249-26073328)
chr6 (1-73)||(27233199-27233271)
chr6 (1-80)||(23897961-23898040)
chr6 (1-66)||(19748497-19748562)
chr6 (1-80)||(7918250-7918327)
chr6 (1-65)||(17250221-17250285)
chr6 (1-80)||(21354890-21354969)
chr6 (1-80)||(7223662-7223744)
chr6 (1-66)||(10508917-10508983)
chr6 (36-74)||(17543675-17543713)
chr6 (1-66)||(17103359-17103424)
chr6 (100-140)||(6823297-6823337)
[»] chr8 (14 HSPs)
chr8 (1-80)||(11879750-11879829)
chr8 (1-80)||(11897166-11897245)
chr8 (1-80)||(23142325-23142403)
chr8 (2-66)||(6810985-6811048)
chr8 (1-80)||(29384212-29384296)
chr8 (1-80)||(7489183-7489262)
chr8 (1-75)||(15761258-15761333)
chr8 (1-80)||(27836364-27836443)
chr8 (95-133)||(7275416-7275454)
chr8 (7-68)||(45403191-45403253)
chr8 (2-80)||(3094143-3094222)
chr8 (1-80)||(15294820-15294898)
chr8 (1-80)||(15475189-15475267)
chr8 (1-80)||(19704357-19704434)
[»] chr7 (18 HSPs)
chr7 (1-80)||(5058679-5058758)
chr7 (1-80)||(44944745-44944824)
chr7 (95-148)||(7737093-7737146)
chr7 (1-80)||(20570785-20570864)
chr7 (95-148)||(41832418-41832472)
chr7 (1-66)||(26617377-26617441)
chr7 (1-80)||(4247506-4247585)
chr7 (1-68)||(27509312-27509378)
chr7 (1-80)||(8329944-8330024)
chr7 (1-64)||(8346431-8346495)
chr7 (1-80)||(24725372-24725456)
chr7 (2-80)||(14055401-14055485)
chr7 (2-80)||(14365429-14365513)
chr7 (1-73)||(17811504-17811577)
chr7 (92-140)||(34512642-34512690)
chr7 (1-71)||(7730259-7730330)
chr7 (1-43)||(24989673-24989715)
chr7 (99-144)||(219320-219364)
[»] chr2 (13 HSPs)
chr2 (95-148)||(24039271-24039324)
chr2 (95-148)||(31269734-31269787)
chr2 (1-80)||(1690628-1690707)
chr2 (1-68)||(19262216-19262283)
chr2 (1-73)||(31237876-31237949)
chr2 (1-66)||(13502573-13502639)
chr2 (1-80)||(1404933-1405012)
chr2 (1-80)||(31578154-31578232)
chr2 (1-80)||(36429998-36430077)
chr2 (1-73)||(15588754-15588822)
chr2 (1-80)||(19492081-19492162)
chr2 (1-80)||(35565857-35565933)
chr2 (1-80)||(34841730-34841810)
[»] chr3 (14 HSPs)
chr3 (1-73)||(25870222-25870294)
chr3 (1-68)||(22355962-22356029)
chr3 (1-66)||(20756186-20756251)
chr3 (1-80)||(28745926-28746005)
chr3 (1-74)||(8156029-8156103)
chr3 (1-80)||(39428052-39428132)
chr3 (1-80)||(42696997-42697077)
chr3 (103-138)||(10745417-10745452)
chr3 (14-80)||(15515171-15515235)
chr3 (1-58)||(3449210-3449266)
chr3 (99-140)||(4607257-4607298)
chr3 (1-60)||(6136469-6136529)
chr3 (1-80)||(6861039-6861119)
chr3 (1-65)||(8560370-8560433)
[»] chr4 (11 HSPs)
chr4 (1-80)||(9911311-9911390)
chr4 (1-80)||(36120974-36121052)
chr4 (1-66)||(23064861-23064926)
chr4 (95-144)||(11814932-11814981)
chr4 (95-133)||(5444519-5444557)
chr4 (1-81)||(9770261-9770341)
chr4 (1-80)||(17466229-17466308)
chr4 (1-80)||(8889378-8889455)
chr4 (1-66)||(5375828-5375894)
chr4 (1-65)||(8011036-8011101)
chr4 (1-80)||(10143049-10143129)
[»] scaffold0525 (1 HSPs)
scaffold0525 (95-148)||(2301-2354)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-80)||(8593-8670)
[»] chr1 (17 HSPs)
chr1 (95-147)||(9906092-9906144)
chr1 (1-73)||(16125355-16125427)
chr1 (1-65)||(17869650-17869714)
chr1 (1-80)||(13276166-13276245)
chr1 (1-80)||(23528806-23528885)
chr1 (99-144)||(35267763-35267808)
chr1 (1-80)||(18304711-18304790)
chr1 (1-80)||(9954933-9955014)
chr1 (2-80)||(47786009-47786086)
chr1 (1-74)||(9327114-9327186)
chr1 (1-74)||(9351963-9352036)
chr1 (1-80)||(13100341-13100419)
chr1 (9-80)||(42179972-42180044)
chr1 (1-74)||(12513437-12513507)
chr1 (2-80)||(25146670-25146748)
chr1 (1-74)||(9128738-9128813)
chr1 (1-65)||(21846174-21846238)
[»] scaffold0263 (1 HSPs)
scaffold0263 (95-129)||(22723-22757)
[»] scaffold0862 (1 HSPs)
scaffold0862 (95-143)||(39-88)
[»] scaffold0417 (1 HSPs)
scaffold0417 (4-73)||(7358-7427)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-61)||(93605-93665)
[»] scaffold1412 (1 HSPs)
scaffold1412 (100-140)||(25-65)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-80)||(8859-8939)
[»] scaffold0001 (1 HSPs)
scaffold0001 (100-140)||(144923-144963)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43235097 - 43235018
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||    
T  43235097 taaaatcgcaatcaaaatcgattgattttaccaaaagataataatagtaagtatatgttataaatggtttatagacataa 43235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 43233700 - 43233589
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggaggtgttcttcttttcnnnnnnngaacaattatcaaagactatgatcta 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                   ||||||| ||||||||||||    
T  43233700 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggtgttctt------------------tttatcaaggactatgatcta 43233619  T
Q  195 atattgcccgtatttatatctctattcttc 224  Q
    ||||||||||||||||||||||||||||||    
T  43233618 atattgcccgtatttatatctctattcttc 43233589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 21256486 - 21256433
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21256486 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 21256433  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 41949638 - 41949691
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  41949638 caaatgcttatccaacaagaggaaaccacaactcaatgtgtaaccacttggagg 41949691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21059057 - 21059135
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || |||||||| || ||| || |||||||| ||||||||||||||||||||||| |||||    
T  21059057 taaaatcgcaatcaaaatcgatggattttac-aacaaaaaaaaatactaaatatatgttataaatggtttatagtcataa 21059135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 17823391 - 17823335
Alignment:
Q  92 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||    
T  17823391 aagcaaatgcttattcaacaagaagaaaccataattcaaggtttaaccacttggagg 17823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18051433 - 18051497
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaat 65  Q
    ||||||||||| ||||||| || ||||| ||||| ||||||||||||||| ||||||||||||||    
T  18051433 taaaatcgcaagcaaaatcgatggatttaaccaaaaaataataatactaaatatatgttataaat 18051497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18843944 - 18843872
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||||||||| | ||| | ||||||||| ||||||||||||||||| ||||    
T  18843944 taaaatcgcaatcaaaatcgatggattttacccaaaaaaattaatactaaatatatgttataaatggtatata 18843872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41688566 - 41688638
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||||||| ||  |||||||||| ||| ||||||||||| |||||||||| |||||| |||||    
T  41688566 taaaatcgcaatcaaaatcgatgaattttaccaaaaaa-aataatactaaatatatgttatgaatggtatatag 41688638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27340087 - 27340163
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata---aataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||||||| || |||||||| || |   |||||||||||||| ||||||||| ||||||| |||||    
T  27340087 taaaatcgcaatcaaaatcgatagattttacaaaaaaataataataatactaaatatatgttacaaatggtatatag 27340163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 15543950 - 15544006
Alignment:
Q  92 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    |||| |||||||||||||||| | |||||||||||| |||||||| || ||||||||    
T  15543950 aagcgaatgcttatccaacaaaaagaaaccacaacttaaggtttacccgcttggagg 15544006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19579172 - 19579104
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttacc-aataaataataatactaagtatatgttataaatggt 68  Q
    ||||||||||||||||||| || ||||||||| || ||| |||||||| || |||||||||| ||||||    
T  19579172 taaaatcgcaatcaaaatcgatggattttaccaaaaaaaaaataataccaaatatatgttatgaatggt 19579104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23172328 - 23172407
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| ||  |||||||| | ||| | ||||| ||| ||||||||| ||||||| ||||| |||||    
T  23172328 taaaatcgcaatcaaaatcgatgaattttacccaaaaaaattaatattaaatatatgttacaaatggtatatagtcataa 23172407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20321172 - 20321106
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataa-taatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| || ||||||||| | ||| || ||||| ||| |||||||||||||||    
T  20321172 taaaatcgcaatcaaaatcgatggattttacccagaaaaaattaatattaaatatatgttataaatg 20321106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38158164 - 38158224
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttata 62  Q
    ||||||| ||||||||||  || ||||||||||| ||| ||||||||||| |||||||||||    
T  38158164 taaaatcacaatcaaaattgatggattttaccaaaaaa-aataatactaaatatatgttata 38158224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 43234700 - 43234672
Alignment:
Q  73 agacataaggtaagtaagaaagcaaatgc 101  Q
    |||||||||||||||||||||||||||||    
T  43234700 agacataaggtaagtaagaaagcaaatgc 43234672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26053196 - 26053275
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  26053196 taaaatcgcaatcaaaatcgatggattttaccaaaaaataataatactaactatatgttataaatggtatatagtcataa 26053275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26073249 - 26073328
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  26073249 taaaatcgcaatcaaaatcgatggattttaccaaaaaataataatactaactatatgttataaatggtatatagtcataa 26073328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27233199 - 27233271
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||||||||||  ||| ||||||||||| ||||||||||||||||| ||||    
T  27233199 taaaatcgcaatcaaaatcgatagattttaccataaaacaataatactaaatatatgttataaatggtatata 27233271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23898040 - 23897961
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||||||||||| || ||||||||||| ||| || |||||||| ||||||||||||||||| ||||| |||||    
T  23898040 taaaatctcaatcaaaatcgatggattttaccaaaaaaaaaaaatactaaatatatgttataaatggtatatagtcataa 23897961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19748562 - 19748497
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| || ||||||||||  ||||||||||||||| ||||| |||||||||    
T  19748562 taaaatcgcaatcaaaatcgatggattttaccagaaaataataatactaaatatattttataaatg 19748497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7918250 - 7918327
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||  ||| ||||||||||| | ||||||||||||| | ||||| |||||    
T  7918250 taaaatcgcaatcaaaatcgatggattttacca--aaaaaataatactaaatttatgttataaatgatatatagtcataa 7918327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17250285 - 17250221
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaat 65  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||| || ||| ||||| ||||||||    
T  17250285 taaattcgcaatcaaaatcaatggattttaccaaaaaacaatagtaataaatatatattataaat 17250221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 21354969 - 21354890
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||| ||| | | |   ||||||||| ||||||||||||||||| ||||| |||||    
T  21354969 taaaatcgcaatcaaaatcgatggatttcacccaaataatttaatactaaatatatgttataaatggtatatagtcataa 21354890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7223744 - 7223662
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatacta----agtatatgttataaatggtttatagacataa 80  Q
    |||||||||||||| ||||||| ||||||||||| | | ||||||||||    | ||||||||||||||||| ||||| |||||    
T  7223744 taaaatcgcaatcagaatcaatggattttaccaa-acaaaataatactaaattaatatatgttataaatggtatatagtcataa 7223662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10508917 - 10508983
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||  || ||||||| ||| | |||||||||| ||| |||||||||||||||    
T  10508917 taaaatcgcaatcaaaattgatggattttatcaaaataataataataataaatatatgttataaatg 10508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 17543675 - 17543713
Alignment:
Q  36 aaataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  17543675 aaataataatactaaatatatgttataaatggtatatag 17543713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17103424 - 17103359
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| || ||||||||| | ||| | ||||| ||| ||||||| |||||||    
T  17103424 taaaatcgcaatcaaaatcgatggattttacctaaaaaaattaataataaatatatgtcataaatg 17103359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 6823297 - 6823337
Alignment:
Q  100 gcttatccaacaagaggaaaccacaactcaaggtttaacca 140  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  6823297 gcttatccaacaagaagcaaccacaactcaaggttgaacca 6823337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11879829 - 11879750
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  11879829 taaaatcgcattcaaaatcgatggattttaccaaaaaataataatactaaatatatgttataaatggtatatagtcataa 11879750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11897245 - 11897166
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  11897245 taaaatcgcattcaaaatcgatggattttaccaaaaaataataatactaaatatatgttataaatggtatatagtcataa 11897166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23142403 - 23142325
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || || |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  23142403 taaaatcgcaatcaaaatcgatggactttaccaa-aaataataatactaaatatatgttataaatggtatatagtcataa 23142325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 6811048 - 6810985
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    |||||||||||||||||| || ||||||||||| ||| ||||||||||| |||||||||||||||    
T  6811048 aaaatcgcaatcaaaatcgatggattttaccaa-aaaaaataatactaaatatatgttataaatg 6810985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 29384212 - 29384296
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataa-----taatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||| ||| ||     ||||||||| ||||||||||||||||| ||||| |||||    
T  29384212 taaaatcgcaatcaaaatcgatggattttaccaaaaaaaaaaatactaatactaaatatatgttataaatggtatatagtcataa 29384296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7489183 - 7489262
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| ||  |||||||  | ||||| ||||||||| ||||||||||||||| | ||||| |||||    
T  7489183 taaaatcgcaatcaaaatcgatgaattttactcaaaaatattaatactaaatatatgttataaatgatatatagtcataa 7489262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15761258 - 15761333
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaatggtttataga 75  Q
    ||||||||||||||||||| || ||||||||||| | || |||||| |||| |||||||||||||| || ||||||    
T  15761258 taaaatcgcaatcaaaatcgatggattttaccaaaacaaaaataatgctaaatatatgttataaattgtatataga 15761333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27836364 - 27836443
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||||||||||| || ||||||||||  ||| || |||||||| || |||||||||||||| ||||| |||||    
T  27836364 taaaatcacaatcaaaatcgatggattttaccagcaaaaaaaaatactaaatacatgttataaatggtatatagtcataa 27836443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 7275416 - 7275454
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggt 133  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7275416 caaaggcttatccaacaagaggaaaccacaactcaaggt 7275454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 45403253 - 45403191
Alignment:
Q  7 cgcaatcaaaatcaattgattttaccaataaa-taataatactaagtatatgttataaatggt 68  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  45403253 cgcaatcaaaatcgatagattttaccaaaaaaataataatattaaatatatgttataaatggt 45403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 3094143 - 3094222
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaataataa-tactaagtatatgttataaatggtttatagacataa 80  Q
    |||||||||||||||||  || |||||||| || ||| || || |||||| ||||||||||||||||| ||||| |||||    
T  3094143 aaaatcgcaatcaaaattgatagattttacaaaaaaaaaaaaaatactaaatatatgttataaatggtatatagtcataa 3094222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15294898 - 15294820
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||| ||||||| || ||||||||| | ||| ||||||||||| ||||||||| |||| || ||||| |||||    
T  15294898 taaaatcgcaagcaaaatccatggattttacctaaaaa-aataatactaaatatatgttacaaatagtgtatagtcataa 15294820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15475267 - 15475189
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||| ||||||| || ||||||||| | ||| ||||||||||| ||||||||| |||| || ||||| |||||    
T  15475267 taaaatcgcaagcaaaatccatggattttacctaaaaa-aataatactaaatatatgttacaaatagtgtatagtcataa 15475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19704357 - 19704434
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||||||||||| || |||||||||  |||| || || ||||| ||||||||| ||||||| ||||| |||||    
T  19704357 taaaatcacaatcaaaatcgatggattttacc--taaaaaaaaaaactaaatatatgttacaaatggtatatagtcataa 19704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5058758 - 5058679
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || || |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  5058758 taaaatcgcaatcaaaatcgatggactttaccaaaaaataataatactaaatatatgttataaatggtatatagtcataa 5058679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44944745 - 44944824
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || || |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||    
T  44944745 taaaatcgcaatcaaaatcgatagactttaccaaaaaataataatactaaatatatgttataaatggtatatagtcataa 44944824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 7737146 - 7737093
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7737146 caaatgcttattcaacaagaggaaaccacaactcaaggtttaaccacttggagg 7737093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 20570785 - 20570864
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||||||||||| || || |||||||| ||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  20570785 taaaatcacaatcaaaatcgatggactttaccaaaaaagaataatactaaatatatgttataaatggtatatagtcataa 20570864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 41832472 - 41832418
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaa-ggtttaaccacttggagg 148  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  41832472 caaatgcttatccaacaagaggaaaccacaactcaagggtgtaaccacttggagg 41832418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26617377 - 26617441
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| |||||||||| ||| ||| ||||||||||| |||||||||||||||    
T  26617377 taaaatcgcaatcaaaatcgattgatttta-caaaaaaaaataatactaaatatatgttataaatg 26617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4247585 - 4247506
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||| | ||| ||||||||||| ||||||||| ||||| | ||||| |||||    
T  4247585 taaaatcgcaatcaaaatcgatggattttacctaaaaaaaataatactaaatatatgttacaaatgatatatagtcataa 4247506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27509312 - 27509378
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggt 68  Q
    |||||||||||| ||| || |||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  27509312 taaaatcgcaataaaattcgattgattttaccaaaaaa-aataatactaaatatatgttataaatggt 27509378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8329944 - 8330024
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttat-aaatggtttatagacataa 80  Q
    |||||| ||||||||||||||| ||||||||||| ||| |  |||| |||||||||||||| ||||||| ||||| |||||    
T  8329944 taaaattgcaatcaaaatcaatggattttaccaaaaaaaataaataataagtatatgttataaaatggtatatagtcataa 8330024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8346431 - 8346495
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaa-taataatactaagtatatgttataaa 64  Q
    ||||||| |||||| ||||||| ||||||||||| ||| |||||||||||| |||||||||||||    
T  8346431 taaaatctcaatcataatcaatggattttaccaaaaaaataataatactaaatatatgttataaa 8346495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24725372 - 24725456
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttacc---aataaat--aataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || |||||||||   || ||||  ||||||||||| ||||||||||||||||| ||||| |||||    
T  24725372 taaaatcgcaatcaaaatcgatggattttacccaaaaaaaataaaataatactaaatatatgttataaatggtatatagtcataa 24725456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 14055485 - 14055401
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaata------ataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||||| ||||||||||| ||| |      |||||| ||| ||||||||||||||||| ||||| |||||    
T  14055485 aaaatcgcaatcaaaatcaatggattttaccaacaaaaaaaaaagataatattaaatatatgttataaatggtatatagtcataa 14055401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 14365513 - 14365429
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaata------ataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||||| ||||||||||| ||| |      |||||| ||| ||||||||||||||||| ||||| |||||    
T  14365513 aaaatcgcaatcaaaatcaatggattttaccaacaaaaaaaaaagataatattaaatatatgttataaatggtatatagtcataa 14365429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17811577 - 17811504
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgatttta-ccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||||||| |||| ||||| ||||| ||| ||||| ||||||||||| ||||    
T  17811577 taaaatcgcaatcaaaatcgatggattttacccaaaaaatattaatattaaatatattttataaatggtatata 17811504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 34512690 - 34512642
Alignment:
Q  92 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaacca 140  Q
    |||||| |||||||||||||||| | ||||||||||||||||| |||||    
T  34512690 aagcaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 34512642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7730259 - 7730330
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaa-taaataataatactaagtatatgttataaatggttta 71  Q
    ||||||||||||||||||  || |||||||||||  ||| || |||||||| ||||||||||||||| ||||    
T  7730259 taaaatcgcaatcaaaattgatggattttaccaacaaaaaaaaaatactaaatatatgttataaatgattta 7730330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24989673 - 24989715
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataata 43  Q
    ||||||||||||||||||| || ||||||||||| ||||||||    
T  24989673 taaaatcgcaatcaaaatcgatggattttaccaaaaaataata 24989715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 219320 - 219364
Alignment:
Q  99 tgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 144  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||    
T  219320 tgcttatccaacaagaagaaac-acaactcaaggtttaaccgcttg 219364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 24039324 - 24039271
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24039324 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 24039271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 31269734 - 31269787
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31269734 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 31269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1690628 - 1690707
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| ||  |||||||||| ||||||||||| ||| ||||| ||||||||||| ||||| |||||    
T  1690628 taaaatcgcaatcaaaatcgataaattttaccaaaaaataataatattaaatatattttataaatggtatatagtcataa 1690707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19262216 - 19262283
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggt 68  Q
    ||||||||||||||||||| |  || |||||||| ||||||||||||||| |||||||||||||||||    
T  19262216 taaaatcgcaatcaaaatcgacggactttaccaaaaaataataatactaactatatgttataaatggt 19262283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31237876 - 31237949
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatac-taagtatatgttataaatggtttata 73  Q
    |||||| |||||||||||| || ||||||||||| |||||||||||| | | ||||||||||||||||| ||||    
T  31237876 taaaattgcaatcaaaatcgatggattttaccaaaaaataataatacatgaatatatgttataaatggtatata 31237949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13502573 - 13502639
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| || ||||||||||| | || ||||||| ||| |||||||||||||||    
T  13502573 taaaatcgcaatcaaaatcgatggattttaccaaaacaaaaataatattaaatatatgttataaatg 13502639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1405012 - 1404933
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||| |||||||||||| || ||||| |  ||  ||||||| | |||||||||||||||||||||| ||||| |||||    
T  1405012 taaaattgcaatcaaaatcgatggatttaaaaaaataataatattcctaagtatatgttataaatggtgtatagtcataa 1404933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31578232 - 31578154
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||||||||| | |||| || ||||||| | | ||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  31578232 taaaatcgcaattataatcgatggattttaaccaaaaa-aataatactaaatatatgttataaatggtatatagtcataa 31578154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36430077 - 36429998
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||| |||||||||||| || ||||||||| | ||| || |||||||| ||||||||| ||||| | ||||| |||||    
T  36430077 taaaattgcaatcaaaatcgatggattttacctaaaaaaaaaaatactaaatatatgttagaaatgatatatagtcataa 36429998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15588754 - 15588822
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||||||||||  ||| ||||||||||| ||||||  ||||||||| ||||    
T  15588754 taaaatcgcaatcaaaatcgatggattttacca--aaaaaataatactaaatatatg--ataaatggtatata 15588822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19492162 - 19492081
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaa--taataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||| || |||||||||| || ||||||||||| |||  ||||||| |||| |||||||||||||| || ||||| |||||    
T  19492162 taaaaccgtaatcaaaatcgatggattttaccaaaaaaaataataatgctaaatatatgttataaattgtatatagtcataa 19492081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 35565857 - 35565933
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||||||||||| || |||||||||   ||| || |||||||| |||||||||||||| || ||||| |||||    
T  35565857 taaaatcacaatcaaaatcgatggattttacc---aaaaaaaaatactaaatatatgttataaattgtatatagtcataa 35565933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 34841810 - 34841730
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgatttta-ccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || |||| || ||||  || ||||||| ||| |||||||||||||| || ||||| |||||    
T  34841810 taaaatcgcaatcaaaatcgatggattctatccaaacaaaaataataataaatatatgttataaattgtatatagtcataa 34841730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25870222 - 25870294
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||||||||||| ||| ||||||||||| ||||||||||||||||| ||||    
T  25870222 taaaatcgcaatcaaaatcgatggattttaccaaaaaacaataatactaaatatatgttataaatggtatata 25870294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22355962 - 22356029
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggt 68  Q
    ||||| ||||| ||||||| || ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  22355962 taaaaccgcaaacaaaatcgatggattttaccaaaaaataataataataaatatatgttataaatggt 22356029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20756251 - 20756186
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    ||||||||||||||||||| || ||||||||| | ||  ||||||||||| |||||||||||||||    
T  20756251 taaaatcgcaatcaaaatcgatggattttacccaaaagaaataatactaaatatatgttataaatg 20756186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 28746005 - 28745926
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||| | ||| | ||||| ||| |||||||||||||| || ||||| |||||    
T  28746005 taaaatcgcaatcaaaatcgatggattttacccaaaaaaattaatagtaaatatatgttataaatagtatatagtcataa 28745926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8156029 - 8156103
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataa--ataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||| |||  | ||||||||||| ||  ||||||||||||| ||||||||||||||||| |||||    
T  8156029 taaaatcgcaatcaatatcg-tggattttaccaaaaataataataatactaaatatatgttataaatggtatatag 8156103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39428132 - 39428052
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgatttta-ccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||| |||| ||| | ||||||||| |||||||||||| | || ||||| |||||    
T  39428132 taaaatcgcaatcaaaatcgatggattttacccaaaaaaaattaatactaaatatatgttataagtagtatatagtcataa 39428052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42697077 - 42696997
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataa-tactaagtatatgttataaatggtttatagacataa 80  Q
    |||| |||||||||||||| || ||||||||||| ||| || || ||| || ||||||||||||||||| ||||| |||||    
T  42697077 taaactcgcaatcaaaatcgatggattttaccaaaaaaaaaaaaataccaaatatatgttataaatggtatatagtcataa 42696997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 10745452 - 10745417
Alignment:
Q  103 tatccaacaagaggaaaccacaactcaaggtttaac 138  Q
    |||||||||||||||||| |||||||||||||||||    
T  10745452 tatccaacaagaggaaactacaactcaaggtttaac 10745417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 15515171 - 15515235
Alignment:
Q  14 aaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||| || ||||||||||| |||  |||||||||| ||||||||||||||||| ||||| |||||    
T  15515171 aaaatccatggattttaccaaaaaa--ataatactaaatatatgttataaatggtatatagtcataa 15515235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3449210 - 3449266
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgt 58  Q
    ||||||||||||||||||  || ||||||||||| ||| ||||||||||| |||||||    
T  3449210 taaaatcgcaatcaaaattgatggattttaccaa-aaaaaataatactaaatatatgt 3449266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 4607298 - 4607257
Alignment:
Q  99 tgcttatccaacaagaggaaaccacaactcaaggtttaacca 140  Q
    |||||||||||||||| | ||||||||||||||||| |||||    
T  4607298 tgcttatccaacaagaagcaaccacaactcaaggttgaacca 4607257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6136469 - 6136529
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgtta 60  Q
    ||||||| ||||||||||| || ||||||||||| | || ||||||||||| |||||||||    
T  6136469 taaaatcacaatcaaaatcgatggattttaccaaaacaaaaataatactaactatatgtta 6136529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6861039 - 6861119
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || |||| |||||| | || |||||  |||| |||||||||||||| || ||||| |||||    
T  6861039 taaaatcgcaatcaaaatcgatggattctaccaaaacaaaaataaagctaactatatgttataaattgtctatagtcataa 6861119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8560370 - 8560433
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaat 65  Q
    ||||||||||||||||||| | ||||| |||||| | | |||||| |||| ||||||||||||||    
T  8560370 taaaatcgcaatcaaaatcga-tgattctaccaaaataaaataatgctaaatatatgttataaat 8560433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9911311 - 9911390
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || || |||||||| ||||||||||||| | ||||||||||||||||| ||||| |||||    
T  9911311 taaaatcgcaatcaaaatcgatggactttaccaaaaaataataatacttaatatatgttataaatggtatatagtcataa 9911390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36121052 - 36120974
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  36121052 taaaatcgcaatcaaaatcgatggattttaccaa-aaataataatactaaatatattttataaatggtatatagtcataa 36120974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23064861 - 23064926
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatg 66  Q
    |||||| |||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||    
T  23064861 taaaattgcaatcaaaatcgaatgattttaccaaaaaataataatactaaatatatgttataaatg 23064926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 11814981 - 11814932
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 144  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  11814981 caaatgcttatccaaccagaggaaaccacaactcaaggtttaaccgcttg 11814932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 5444557 - 5444519
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggt 133  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5444557 caaatgcttatccaacaagaggaaaccacaactcaaggt 5444519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9770341 - 9770261
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataag 81  Q
    ||||||||||||||||||| ||  |||||||| | ||| | ||||||||| |||||||||| |||||| ||||| ||||||    
T  9770341 taaaatcgcaatcaaaatcgatgaattttacccaaaaaaattaatactaaatatatgttatgaatggtatatagtcataag 9770261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 17466308 - 17466229
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||| |||||||||||| || |||||||| |  ||| ||||||| ||| ||||||||||||||||| ||||| |||||    
T  17466308 taaaattgcaatcaaaatcgatggattttacaacaaaaaaataatattaaatatatgttataaatggtatatagtcataa 17466229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8889455 - 8889378
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| ||  |||||||||| ||| ||  ||||||| ||||| ||||||||||| ||||| |||||    
T  8889455 taaaatcgcaatcaaaatcgatgaattttaccaacaaaaaa--atactaaatatatattataaatggtatatagtcataa 8889378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5375894 - 5375828
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataat-aatactaagtatatgttataaatg 66  Q
    ||||||| ||||||||||| || ||||||||| | ||| ||| |||||||| |||||||||||||||    
T  5375894 taaaatcacaatcaaaatcgatggattttacccaaaaaaaattaatactaaatatatgttataaatg 5375828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8011036 - 8011101
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaat 65  Q
    ||||||||||||||||||| ||  |||||||||| | || |||||| |||| ||||||||||||||    
T  8011036 taaaatcgcaatcaaaatcgatgtattttaccaaaacaaaaataatgctaaatatatgttataaat 8011101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10143129 - 10143049
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataa-taatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||  || ||||||| ||| ||| || ||||||||| ||||| |||||| |||| ||||| |||||    
T  10143129 taaaatcgcaatcaaaattgatggattttatcaaaaaaaaaataatactaaatatatattataattggtatatagtcataa 10143049  T

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Target: scaffold0525 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 2301 - 2354
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2301 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaatcacttggagg 2354  T

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Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8670 - 8593
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||  ||| ||||||||||| |||||| |||||||||| ||||| |||||    
T  8670 taaaatcgcaatcaaaatcgatggattttacca--aaaaaataatactaaatatatggtataaatggtatatagtcataa 8593  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 9906092 - 9906144
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggag 147  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  9906092 caaatgcctatccaacaagaggaaaccacaactcaaggtgtaatcacttggag 9906144  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16125355 - 16125427
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    ||||||||||||||||||| || ||  ||||| | ||||||||||||||| ||||||||||||||||| ||||    
T  16125355 taaaatcgcaatcaaaatcgatggacgttacccaaaaataataatactaaatatatgttataaatggtatata 16125427  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17869650 - 17869714
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaat 65  Q
    ||||||||||||||||||| ||  |||||||||| ||||||||||||||| |||||||| |||||    
T  17869650 taaaatcgcaatcaaaatcgatgaattttaccaaaaaataataatactaaatatatgttgtaaat 17869714  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13276166 - 13276245
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||| |||||||||||| || || | |||||| ||||||||||||||| ||||||||||||||| | ||||| |||||    
T  13276166 taaaattgcaatcaaaatcgatggactataccaaaaaataataatactaaatatatgttataaatgatatatagtcataa 13276245  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23528885 - 23528806
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||| |  |||||||||| ||| |||| |||||||||||| ||||| |||||    
T  23528885 taaaatcgcaatcaaaatcgatggattttacccaataataataataataaatatacgttataaatggtatatagtcataa 23528806  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 35267763 - 35267808
Alignment:
Q  99 tgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 144  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  35267763 tgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttg 35267808  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18304711 - 18304790
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||| ||| ||| | ||||||||| |||| ||||| |||||| ||||| |||||    
T  18304711 taaaatcgcaatcaaaatcgatggattttatcaaaaaaaattaatactaaatatacgttatgaatggtatatagtcataa 18304790  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9954933 - 9955014
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttacc--aataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||| ||| || ||||||||   || ||||||||||||| | ||||||||||||||||| ||||| |||||    
T  9954933 taaaatcgcaatcaagatcgatggattttacacaaaaaaataataatactgaatatatgttataaatggtatatagtcataa 9955014  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 47786086 - 47786009
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||| ||| |||||| || ||||||||||  ||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  47786086 aaaatcgaaataaaaatcgatggattttaccacaaaa-aataatactaaatatatgttataaatggtatatagtcataa 47786009  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9327114 - 9327186
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||||||| ||  |||||||| | ||| ||||||||||| ||||| ||||||||||| |||||    
T  9327114 taaaatcgcaatcaaaatcgatgaattttacccaaaaa-aataatactaaatatatattataaatggtatatag 9327186  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9351963 - 9352036
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||| ||||||||||| ||  |||||||| | ||| | ||||||||| ||||||||||||||||| |||||    
T  9351963 taaaatcacaatcaaaatcgatgaattttacccaaaaaaattaatactaaatatatgttataaatggtatatag 9352036  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13100419 - 13100341
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgatttta-ccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||| |||| |||||  |||||||| ||||||||| ||||||| ||||| |||||    
T  13100419 taaaatcgcaatcaaaatcgatggattttacccaaaaaata--aatactaaatatatgttacaaatggtatatagtcataa 13100341  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 42179972 - 42180044
Alignment:
Q  9 caatcaaaatcaattgattttaccaataaata-ataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||| || ||||||||||| ||| | |||||||||  ||||||||||||||||| ||||| |||||    
T  42179972 caatcaaaatcgatggattttaccaaaaaaaatataatactatatatatgttataaatggtatatagtcataa 42180044  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12513507 - 12513437
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||||||| || ||||||||||| |||| |||||| |||  |||||||||| ||||| |||||    
T  12513507 taaaatcgcaatcaaaatcgatagattttaccaaaaaat-ataatattaa--atatgttatatatggtatatag 12513437  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 25146670 - 25146748
Alignment:
Q  2 aaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttatagacataa 80  Q
    |||||||||||||||||| || ||||||||| | ||| | | ||||||| |||| ||||||||| || ||||| |||||    
T  25146670 aaaatcgcaatcaaaatcgatggattttacccaaaaaaattgatactaaatatacgttataaattgtatatagtcataa 25146748  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9128738 - 9128813
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataa--ataataatactaagtatatgttataaatggtttatag 74  Q
    ||||||||||||||||||  ||  ||||||| ||| |  |||||||||||||  |||||||||||||||| |||||    
T  9128738 taaaatcgcaatcaaaatttatgaattttacaaatgataataataatactaaagatatgttataaatggtatatag 9128813  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21846174 - 21846238
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaat 65  Q
    ||||||||||||||||||  ||  |||||||| | ||| | ||||||||| ||||||||||||||    
T  21846174 taaaatcgcaatcaaaatagatgaattttacccaaaaaaattaatactaaatatatgttataaat 21846238  T

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Target: scaffold0263 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 22757 - 22723
Alignment:
Q  95 caaatgcttatccaacaagaggaaaccacaactca 129  Q
    |||||||||||||||||||||||||||||||||||    
T  22757 caaatgcttatccaacaagaggaaaccacaactca 22723  T

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Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 88 - 39
Alignment:
Q  95 caaatgctta-tccaacaagaggaaaccacaactcaaggtttaaccactt 143  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  88 caaatgcttactccaacaagagaaaaccacaactcaaggtgtaaccactt 39  T

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Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 7358 - 7427
Alignment:
Q  4 aatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttataaatggtttata 73  Q
    |||||||||||||||| ||  |||||||||| ||| ||||||||||| |||||||| ||| |||| ||||    
T  7358 aatcgcaatcaaaatcgatgaattttaccaaaaaacaataatactaaatatatgttctaattggtatata 7427  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 93605 - 93665
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaataaataataatactaagtatatgttat 61  Q
    ||||||||||||||||||| || ||||||||||| ||  |||| |||||| ||||||||||    
T  93605 taaaatcgcaatcaaaatcgatggattttaccaaaaacaaatattactaaatatatgttat 93665  T

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Target: scaffold1412 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 25 - 65
Alignment:
Q  100 gcttatccaacaagaggaaaccacaactcaaggtttaacca 140  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  25 gcttatccaacaagaagcaaccacaactcaaggttgaacca 65  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8859 - 8939
Alignment:
Q  1 taaaatcgcaatcaaaatcaattgattttaccaata-aataataatactaagtatatgttataaatggtttatagacataa 80  Q
    ||||||||||||||||||| || ||||||||||| | ||  ||||| |||| |||||||||||| | || ||||| |||||    
T  8859 taaaatcgcaatcaaaatcgatggattttaccaaaacaaagataatgctaaatatatgttataagttgtatatagtcataa 8939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 144923 - 144963
Alignment:
Q  100 gcttatccaacaagaggaaaccacaactcaaggtttaacca 140  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  144923 gcttatccaacaagaagcaaccacaactcaaggttgaacca 144963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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