View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21266_high_47 (Length: 244)
Name: NF21266_high_47
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_high_47 |
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| [»] chr7 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 3390418 - 3390185
Alignment:
| Q |
11 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390418 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
3390319 |
T |
|
| Q |
111 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390318 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
3390219 |
T |
|
| Q |
211 |
aaaatgattatatccaaatatccatcaataaagg |
244 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3390218 |
aaaatgattatatccaaatatccatcaataaagg |
3390185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 3403701 - 3403468
Alignment:
| Q |
11 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403701 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
3403602 |
T |
|
| Q |
111 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403601 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
3403502 |
T |
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| Q |
211 |
aaaatgattatatccaaatatccatcaataaagg |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
3403501 |
aaaatgattatatccaaatatccatcaataaagg |
3403468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 3370061 - 3369840
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
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||||| ||||||||||||||||| |||||| ||| |||||| ||||||||| |||||||||| || ||||||||||| |||||||| | |||||| || | |
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| T |
3370061 |
tattcaagaaagttcatggaatatctatctttgagtactttaagaaagatccacaaataaaccacatatttaacaaatcaatgactgatacatgtacact |
3369962 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
3369961 |
ccacatgaaaacaatccttgaaatatacaaaggatatgaggatatatcaaccctaattgatgtaggaggtggaaatggacaaagtctcaaagccattata |
3369862 |
T |
|
| Q |
223 |
tccaaatatccatcaataaagg |
244 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3369861 |
tccaaatatccatcaataaagg |
3369840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 3360521 - 3360308
Alignment:
| Q |
31 |
aaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatga |
130 |
Q |
| |
|
||||||||||||||| | || | |||||||||| ||||||||| ||| ||||| | ||||||||||| ||||||| | ||||| ||| |||||||| |
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| T |
3360521 |
aaagttcatggaataacaatgtttgaatactttaagaaagatccacagataaatgaaatatttaacaaatcaatgacggatacatgcacaactcacatga |
3360422 |
T |
|
| Q |
131 |
aaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaata |
230 |
Q |
| |
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||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| |
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| T |
3360421 |
aaagaatccttgaaatataccaaggatttgagggaatatcaacactggttgatgtaggtggtggaacagggcaaagtctcaaaatgattatctctaaata |
3360322 |
T |
|
| Q |
231 |
tccatcaataaagg |
244 |
Q |
| |
|
||||||||||||| |
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| T |
3360321 |
cccatcaataaagg |
3360308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 3299158 - 3298937
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
|
||||| |||||||| |||||||| | | ||||| ||||||| |||||||| |||||||||| | |||||||||||| |||||||| | ||||| | |
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|
| T |
3299158 |
tattcaagaaagttaatggaatatcaaagtatgagtactttgggaaagatccacaaataaaccagttatttaacaaatcaatgactgatacatgcaatgt |
3299059 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||| || ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
3299058 |
tcacatgaaaagaatccttgacatatacaaaggatttgagggggtatcaactttggttgatgtaggaggtggcaatggacaaactctcaagttgattatt |
3298959 |
T |
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| Q |
223 |
tccaaatatccatcaataaagg |
244 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
3298958 |
gccaaatacccatcaataaagg |
3298937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 3349339 - 3349118
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaa- |
121 |
Q |
| |
|
||||| |||||||| |||||||| | | ||||| ||||||| |||||||| |||||||||| | |||| |||||| |||||||| || ||| ||| |
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| T |
3349339 |
tattcaagaaagttaatggaatatcaaagtatgagtactttgggaaagatccacaaataaaccaaatattcaacaaatcaatgact--aatatgaccaaa |
3349242 |
T |
|
| Q |
122 |
-ttcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgatta |
220 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||| || ||||||||||| |||||||| | |||||||||||||||||| |||||||||||||| |
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|
| T |
3349241 |
attcacatgaaagaaattcttgaaaaatacaaaggatacgagggaatatcaactttggttgatattggaggtggaaatggacaaactctcaaaatgatta |
3349142 |
T |
|
| Q |
221 |
tatccaaatatccatcaataaagg |
244 |
Q |
| |
|
| |||||||||||||| |||| |
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| T |
3349141 |
ttgaaaaatatccatcaattaagg |
3349118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 23993385 - 23993606
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
|
||||| |||||||| |||| ||| |||| ||||| ||||||| |||||| |||||||||||| ||||||||||| |||||||| | ||||| | |
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|
| T |
23993385 |
tattcaagaaagttaatgggatatctatgtatgagtactttggaaaagattcacaaataaacaaaatatttaacaaatcaatgactgatacatgcaatgt |
23993484 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
|
| | || | || |||| ||||| ||||||||| ||| ||| ||||||| ||||||||||||||||||| | ||||||| ||||||||| ||||| |
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| T |
23993485 |
tgagattagaaaaatcgttgaagaatacaaaggtcttgagggagtatcaactatggttgatgtaggaggtggcagtggacaaagtctcaaaactattatt |
23993584 |
T |
|
| Q |
223 |
tccaaatatccatcaataaagg |
244 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23993585 |
gccaaatatccatcaataaagg |
23993606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 43365078 - 43365195
Alignment:
| Q |
127 |
atgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatcca |
226 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| ||| |||||||||||| |||||||||| |||||||||| ||||| | ||| || |||| ||||||| |
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|
| T |
43365078 |
atgaaaagaatgcttgaaatatacactggatttgagggaatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatcca |
43365177 |
T |
|
| Q |
227 |
aatatccatcaataaagg |
244 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
43365178 |
aatacccattaataaagg |
43365195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 20720475 - 20720411
Alignment:
| Q |
180 |
tgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaagg |
244 |
Q |
| |
|
|||||||||||| || || |||||| ||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
20720475 |
tgatgtaggaggaggcaacggacaaagtctctaaatgattattgccaaatacccatcaataaagg |
20720411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 6283185 - 6283131
Alignment:
| Q |
142 |
gaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaa |
196 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | |||||||||| ||||| |||| |
|
|
| T |
6283185 |
gaaaaatacaaaggatttgaaggaatatcaatattggttgatgttggaggaggaa |
6283131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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