View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_high_52 (Length: 236)

Name: NF21266_high_52
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_high_52
NF21266_high_52
[»] chr5 (11 HSPs)
chr5 (1-220)||(13418625-13418845)
chr5 (1-220)||(13425501-13425719)
chr5 (58-220)||(13446263-13446425)
chr5 (61-219)||(13412308-13412466)
chr5 (96-220)||(13453118-13453242)
chr5 (73-220)||(13411626-13411773)
chr5 (81-207)||(13386128-13386254)
chr5 (166-220)||(13448892-13448946)
chr5 (81-199)||(13389924-13390042)
chr5 (96-169)||(13394414-13394487)
chr5 (80-220)||(13372495-13372635)
[»] chr4 (1 HSPs)
chr4 (73-220)||(47600457-47600604)
[»] chr8 (1 HSPs)
chr8 (93-170)||(28431615-28431692)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13418625 - 13418845
Alignment:
Q  1 aaatctaaaacatcattggcaaa-gcgatacacttaaagctgtaaatcattctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttc 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13418625 aaatctaaaacatcattggcaaaagcgatacacttaaagctgtaaatcattctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttc 13418724  T
Q  100 caatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggctttac 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13418725 caatatcaatcacgaatcgatatttaacatctgctttatcgagacgctccattgctgtgttgacataatcaataggaacaacctcaatatcaggcgttac 13418824  T
Q  200 attgtgttctgctgcaaaatc 220  Q
    |||||||||||||||||||||    
T  13418825 attgtgttctgctgcaaaatc 13418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13425501 - 13425719
Alignment:
Q  1 aaatctaaaacatcattggcaaagcgatacacttaaagctgtaaatcattctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttcc 100  Q
    ||||| ||||||| |||| ||| | |||||| |||||||||| |||||||||  |||||||||||||||||||||||||||||||||| || ||||||||    
T  13425501 aaatccaaaacattattgacaa-gtgatacaattaaagctgtgaatcattctgtgagatatatcctgcaatgtttaagggcttggttttagtgtatttcc 13425599  T
Q  101 aatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggctttaca 200  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||    
T  13425600 aatatcaataacgaatcgatatttcacatctgctttctcgagacgctccattgctgtgttgacataatcaataggaacaacctcaatatcaggtgttaca 13425699  T
Q  201 ttgtgttctgctgcaaaatc 220  Q
    |||||||| || ||||||||    
T  13425700 ttgtgttcggccgcaaaatc 13425719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 13446263 - 13446425
Alignment:
Q  58 atatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgt 157  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||| ||||  | |||||||||||||| ||    
T  13446263 atatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggt 13446362  T
Q  158 gttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatc 220  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||  || ||||||||    
T  13446363 gttgacataatcaataggaacaacctcaatctcaggcgttacattgtgtttagcagcaaaatc 13446425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 13412308 - 13412466
Alignment:
Q  61 tatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgtt 160  Q
    |||||||||| ||| ||| |||||||||||| || ||||||||||||||||| ||||||||||| || ||| | ||  | ||||||| ||||||||||||    
T  13412308 tatcctgcaaagttcaagagcttggtttcagtgtgtttccaatatcaatcacaaatcgatatttcacgtctcccttagcaagacgctgcattgctgtgtt 13412407  T
Q  161 gacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaat 219  Q
    |||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||    
T  13412408 gacataatcaatcggaacaacctcgatatccggctttacattgtgttctgccgcaaaat 13412466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 13453118 - 13453242
Alignment:
Q  96 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggct 195  Q
    ||||||||||||||||| ||||||||||| |||||||||||    || |||||||| ||||||||||||||||||||||| |  | ||||||||||||||    
T  13453118 tttccaatatcaatcacaaatcgatatttcacatctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatcaggct 13453217  T
Q  196 ttacattgtgttctgctgcaaaatc 220  Q
    ||||||||||||| || ||||||||    
T  13453218 ttacattgtgttccgccgcaaaatc 13453242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 13411773 - 13411626
Alignment:
Q  73 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 172  Q
    |||||||||||| ||| || || |||| ||| |||||||| ||||||||||||||||||| ||| | || ||||||||||||||||||||||||||| ||    
T  13411773 tttaagggcttgttttaagagtgtttctaatgtcaatcacaaatcgatatttaacatctgatttgtggacacgctccattgctgtgttgacataatccat 13411674  T
Q  173 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatc 220  Q
    ||| |  || ||||||||||| | |||||||||||  || ||||||||    
T  13411673 aggtatgacttcaatatcaggttgtacattgtgtttagcagcaaaatc 13411626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 13386254 - 13386128
Alignment:
Q  81 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 180  Q
    ||||||||||| || |||||||| || | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| ||||    
T  13386254 cttggtttcagagtgtttccaatgtcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacaa 13386155  T
Q  181 cctcaatatcaggctttacattgtgtt 207  Q
    | ||||| ||||| |||||||||||||    
T  13386154 cttcaatgtcaggttttacattgtgtt 13386128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 13448892 - 13448946
Alignment:
Q  166 aatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatc 220  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  13448892 aatcgataggaacaacctcagtatcaggctttacattgtgttctgctgcaaaatc 13448946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 13390042 - 13389924
Alignment:
Q  81 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 180  Q
    ||||||||||  || ||||| ||||| | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| || |    
T  13390042 cttggtttcaaagtgtttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacga 13389943  T
Q  181 cctcaatatcaggctttac 199  Q
    | ||||| ||||| |||||    
T  13389942 cttcaatgtcaggttttac 13389924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 13394487 - 13394414
Alignment:
Q  96 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatc 169  Q
    ||||| ||||| | ||| ||||||||||| |||||||||||   ||| |||| |||||||||||| ||||||||    
T  13394487 tttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgcttcattgctgtgttaacataatc 13394414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 13372495 - 13372635
Alignment:
Q  80 gcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggaca 179  Q
    ||||| ||||| ||| |||||||| ||||| || || |||||||| ||||| |||||    ||||| ||||||||  | || |||||||| || || | |    
T  13372495 gcttgctttcaacgtgtttccaatgtcaataacaaagcgatatttcacatcagctttgagtagacgatccattgcactattcacataatctattggaata 13372594  T
Q  180 acctcaatatcaggctttacattgtgttctgctgcaaaatc 220  Q
    |||||||||||||| || ||||  ||||  |||||||||||    
T  13372595 acctcaatatcaggtttcacatcatgtttggctgcaaaatc 13372635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 47600457 - 47600604
Alignment:
Q  73 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 172  Q
    |||||| ||||||||| || || |||||||| |||||||| ||||||||||| |||||||||||   ||| ||||||||||| ||||| |||||||| ||    
T  47600457 tttaagagcttggtttgagagtgtttccaatgtcaatcacaaatcgatatttgacatctgctttgaggagtcgctccattgcagtgttaacataatccat 47600556  T
Q  173 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatc 220  Q
    |||||  || |||||   ||| |||||||||||||  || ||||||||    
T  47600557 agggatgacttcaatggtaggttttacattgtgtttagcagcaaaatc 47600604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 28431692 - 28431615
Alignment:
Q  93 gtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatca 170  Q
    ||||| ||||||||||| || ||||||||||| |||||||||||    |||||||||| ||| ||||| |||||||||    
T  28431692 gtattcccaatatcaataacaaatcgatatttgacatctgctttaagcagacgctccaatgcagtgttcacataatca 28431615  T

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