View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_11 (Length: 459)
Name: NF21266_low_11
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 26555339 - 26555778
Alignment:
| Q |
1 |
atcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtcctcattaaatcca |
100 |
Q |
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| T |
26555339 |
atcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtcctcattaaatcca |
26555438 |
T |
|
| Q |
101 |
tagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaacagtcacagtagt |
200 |
Q |
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| T |
26555439 |
tagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaacagtcacagtggt |
26555538 |
T |
|
| Q |
201 |
taactggcataacaagattggaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtca |
300 |
Q |
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| T |
26555539 |
taactggcataacaaaattgaaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtca |
26555638 |
T |
|
| Q |
301 |
aatagcggctgtagtggcactatatcactatataggtatcgcatagcagaatttgaacaaattgctatgattttgtgctacac------gtacaaggtgt |
394 |
Q |
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| T |
26555639 |
aatagcggctttagtggcactatatcactatata------gcatagcagaatttgaacaaattgctatgattttgtgctacactattaagtacaaggtgt |
26555732 |
T |
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| Q |
395 |
tgtcaaatagcgactataacattgtagccagtgttattgatggggg |
440 |
Q |
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| T |
26555733 |
tgtcaaatagcgactataacaatgtagccagtgttattgatggggg |
26555778 |
T |
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