View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_13 (Length: 445)
Name: NF21266_low_13
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 31334050 - 31334210
Alignment:
| Q |
115 |
aattttcccgaaagcatcaggacatgctt-atagccaagtaacaatgtttttggcggaaaacatgggagggtattgatgtaaat-agataattatatttg |
212 |
Q |
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| T |
31334050 |
aattttcccgaaagcatcacgacatgctttatagccaagtaacaatgtttttggcggaaaacatgggagggaattgatgtaattaagataattatattta |
31334149 |
T |
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| Q |
213 |
gtgtaaaaaatcattcgtggaatttgtcgctatgttttttatcgggagaactagcattttcc |
274 |
Q |
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| T |
31334150 |
gtgtaaaaaaccatttgtagaa-ttgtcacaatgtattctatcgggataactagcattttcc |
31334210 |
T |
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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 25619512 - 25619638
Alignment:
| Q |
115 |
aattttcccgaaagcatcaggacatgcttatagccaagtaacaatgtttttggcggaaaacatgggagggtattgatgtaaat-agataattatatttgg |
213 |
Q |
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||||||||||||| ||||| |||||| | | |||||||||||||||||||||||||||||||| |||||| |||| ||||| | |||||| ||| ||| | |
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| T |
25619512 |
aattttcccgaaatcatcacgacatggtaaaagccaagtaacaatgtttttggcggaaaacatcggagggaattggtgtaattaagataaatatgtttag |
25619611 |
T |
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| Q |
214 |
tgtaaaaaatcattcgtggaatttgtc |
240 |
Q |
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| T |
25619612 |
tgtaaaaaatcattcgtggaatttgtc |
25619638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 10064020 - 10064135
Alignment:
| Q |
149 |
caagtaacaatgtttttggcggaaaacatgggagggtattgatgtaaata-gataattatatttggtgtaaaaaatcattcgtggaatttgtcgctatgt |
247 |
Q |
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| T |
10064020 |
caagtaacagtgtttttggcggaaaatatgggagggtattg---taattaagacaattatgtttagtgtaaaaattcattcgtggaacttgtcgctatgt |
10064116 |
T |
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| Q |
248 |
tttttatcgggagaactag |
266 |
Q |
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||| ||||||||||||||| |
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| T |
10064117 |
tttctatcgggagaactag |
10064135 |
T |
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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 35292998 - 35292919
Alignment:
| Q |
115 |
aattttcccgaaagcatcaggacatgcttatagccaagtaacaatgtttttggcggaaaacatgggagggtattgatgta |
194 |
Q |
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| T |
35292998 |
aattttcccgaaagcatcacgccatgcttatagccaagtaacagtgtttttggcggaaaacatggtagggtaatgatgta |
35292919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 34661797 - 34661696
Alignment:
| Q |
171 |
aaaacatgggagggtattgatgtaaata-gataattatatttggtgtaaaaaatcattcgtggaatttgtcgctatgttttttatcgggagaactagcat |
269 |
Q |
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||||||| ||||||||||||||||| || ||||||||| ||| |||||||| |||| || |||||| |||||||||| |||||||||||||||||| |
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| T |
34661797 |
aaaacatcggagggtattgatgtaattaagataattatgtttagtgtaaaatatcaatc-----atttgtggctatgttttctatcgggagaactagcat |
34661703 |
T |
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| Q |
270 |
tttcctt |
276 |
Q |
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||||||| |
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| T |
34661702 |
tttcctt |
34661696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 18357207 - 18357166
Alignment:
| Q |
400 |
atattcacttaaaagatggaggacctcttgtctgtgctgctc |
441 |
Q |
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| T |
18357207 |
atattcacttcaaagatggaagacctcttgtctttgctgctc |
18357166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 2473289 - 2473237
Alignment:
| Q |
170 |
gaaaacatgggagggtattgatgtaaat-agataattatatttggtgtaaaaa |
221 |
Q |
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||||||| |||||||||||||||||| | ||| |||||||||| ||||||||| |
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| T |
2473289 |
gaaaacaagggagggtattgatgtaattaagaaaattatatttagtgtaaaaa |
2473237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 16838442 - 16838474
Alignment:
| Q |
315 |
attgagaataaggaacattccatcctaacaacc |
347 |
Q |
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| T |
16838442 |
attgagaatatggaacattccatcctaacaacc |
16838474 |
T |
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