View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_14 (Length: 427)
Name: NF21266_low_14
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 38857834 - 38857428
Alignment:
| Q |
15 |
gaacaatgaactcagaaattactaatccatagaaagnnnnnnnnnnnnngaacaaagatgctgggagttgtactacaaaagatagacaaataagatgaga |
114 |
Q |
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| T |
38857834 |
gaacaatgaactcagaaattactaatccatagaaagaaaaaaagaaaaagaacaaagatgctgggagttgtactacaaaagatagacaaataagatgaga |
38857735 |
T |
|
| Q |
115 |
aagtgaatgagaattagaagcttattcaaaacccagccattcaacatgcttctagatgcccctgaacctgaatcaccggaaccactaggtgccactgttt |
214 |
Q |
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| T |
38857734 |
aagtgaatgagaattagaagcttattcaaaacccagccattcaacatgctcctagatgcccctgaacctgaatcaccggaaccactaggtgccactgttt |
38857635 |
T |
|
| Q |
215 |
aaaaacaaatcagaaacaatcaaagagatcattagcaatcagcaagtaatatcacaaaccaaatacataatccgtaactaac------------taacta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38857634 |
aaaaacaaatcagaaacaatcaaagagatcattagcaatcagcaagtaatatcacaaaccaaatacataatccgtaactaactaacaaactaactaacta |
38857535 |
T |
|
| Q |
303 |
accggcacaagtgttctgagtagcaagagtggtagagatattgccagaagaagtataaccagtgtaatcacaaacagtacggctacacgaatttgtggat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
38857534 |
accggcacaagtgttctgagtagcaagagtggtagagatattgcgagaagaagtataaccagtgtaatcacaaactctacggctacacgaatctgtggat |
38857435 |
T |
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| Q |
403 |
gtagtgt |
409 |
Q |
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||||||| |
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| T |
38857434 |
gtagtgt |
38857428 |
T |
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