View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_15 (Length: 427)
Name: NF21266_low_15
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 34772420 - 34772825
Alignment:
| Q |
15 |
atttgctcatgtcatttctgatttaatgaaaattataagatagaagatgatgctcacaagaattttaattccctcttgcttgctaattaaacaaaatgaa |
114 |
Q |
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| T |
34772420 |
atttgctcatgtcatttctgatttaatgaaaattataagatagaagatgatgctcacaagaattttaattccctcttgcttgctaattaaacaaaatgaa |
34772519 |
T |
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| Q |
115 |
actaacatcgatgaaagtttaccctttcagaaatctattgtcgagttttttggattccaaaacttcgcaatcannnnnnnnctgtgtacagatttttagt |
214 |
Q |
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| T |
34772520 |
actaacatcgatgaaagtttaccctttcagaaatctattgtcgagttttttggattccaaaacttcgcaatcattttttttctgtgtacagatttttagt |
34772619 |
T |
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| Q |
215 |
atctgttatcggttgttagtcgcttgaggtggattttttggatttgggcgtgtgctgtttttgtggcctgttttggtagtcttaggtatttcaggtttag |
314 |
Q |
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| T |
34772620 |
atctgttatcggttgttagtcgcttgaggtggattttttggatttgggcgtgtgctgtttttgtggcctgttttggtagtcttaggtatttgaggtttag |
34772719 |
T |
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| Q |
315 |
ggatcaatagcctcttaaaatgtttagtaaaaatttacatttgatttattttgctccctggtgtgctgctgccgaggttttttcatgtttttagcagaga |
414 |
Q |
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| T |
34772720 |
ggatcaatagcctcttaaaatgtttagtaaaaatttacatttgatttattttgctccctggtgtgctgctgccgaggttttttcatgtttttagcagaga |
34772819 |
T |
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| Q |
415 |
ttttct |
420 |
Q |
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| T |
34772820 |
ttttct |
34772825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 34797821 - 34797913
Alignment:
| Q |
200 |
gtacagatttttagtatctgttatcggttgttagtcgcttgaggt-ggattttttggatttgggcgtgtgctgtttttgtggcctgttttggt |
291 |
Q |
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| T |
34797821 |
gtacagatttttagtgtctgtaatctgttgtaagtcgctcgaggtgggtttttttggatttgagcgtggactgtttttgtggcctcttttggt |
34797913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 34798472 - 34798544
Alignment:
| Q |
285 |
ttttggtagtcttaggt---atttcaggtttagggatcaatagcctcttaaaatgtttagtaaaaatttacat |
354 |
Q |
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||||||||||||||||| |||| |||||| |||||||||||||||||| || |||| | ||||||||||| |
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| T |
34798472 |
ttttggtagtcttaggtcttatttgaggtttggggatcaatagcctcttataaagttttttcaaaatttacat |
34798544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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