View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21266_low_16 (Length: 409)
Name: NF21266_low_16
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_16 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 742011 - 742413
Alignment:
| Q |
1 |
catctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742011 |
catctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaag |
742110 |
T |
|
| Q |
101 |
aggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742111 |
aggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggta |
742210 |
T |
|
| Q |
201 |
cattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742211 |
cattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcag |
742310 |
T |
|
| Q |
301 |
ttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
742311 |
ttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttct |
742410 |
T |
|
| Q |
401 |
cac |
403 |
Q |
| |
|
||| |
|
|
| T |
742411 |
cac |
742413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 42449163 - 42449543
Alignment:
| Q |
23 |
agttcctttcctacaaaaacgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttg |
122 |
Q |
| |
|
|||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
42449163 |
agttcctttcttaccaagacgattacctacatccttgatttgcaaccttgcaaccttcctcaattgctggtaagaaagaggattgaatactacaactttg |
42449262 |
T |
|
| Q |
123 |
gttagctggcccaacaattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccacttt |
222 |
Q |
| |
|
|| ||||| ||||||||||| | |||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
42449263 |
gtcagctgattcaacaattctagcaggaaatgctcactgacttcctgcattactcgatcgtgagctacttggatggtacattttcctgaaagtccactta |
42449362 |
T |
|
| Q |
223 |
ggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagat |
322 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42449363 |
agagatgatcggcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagat |
42449462 |
T |
|
| Q |
323 |
ataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcatctcac |
403 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||||| |
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|
| T |
42449463 |
ataaagtaatttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctcac |
42449543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 41 - 396
Target Start/End: Original strand, 739958 - 740318
Alignment:
| Q |
41 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
140 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| | |||||| ||||||| | ||| | ||||||| |
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|
| T |
739958 |
acgattagctacatccttcatttgcatccttgcaaccttcctcaattgcttgtgagaaagagggtcgaatacaacaacttcgtccagccgattcaacaat |
740057 |
T |
|
| Q |
141 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
240 |
Q |
| |
|
||| || |||||||| | ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||| |
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|
| T |
740058 |
tctggcctgaaatgatttctcacttcctgcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaa |
740157 |
T |
|
| Q |
241 |
ggttcgaggtcatgataacgaccgtgt-----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttg |
335 |
Q |
| |
|
|||| ||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || || |
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|
| T |
740158 |
ggtttgaggtcatgataatgactgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtg |
740257 |
T |
|
| Q |
336 |
ttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttc |
396 |
Q |
| |
|
|| | |||||| ||||||||||||||||||| || ||||||| |||| ||| |||||||| |
|
|
| T |
740258 |
tttaatacagatatatgtgctttctccacttgctctaaaagtatcacactgtgtggccttc |
740318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 378
Target Start/End: Complemental strand, 10046920 - 10046583
Alignment:
| Q |
41 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
140 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||| || |||| |||||| ||||||| | |||| ||||||| |
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|
| T |
10046920 |
acgactagcaacatccttcatttgcaaccttgcaaccttcctcaattgctcgtgagatagtggatcgaatacaacaacttcgtctagcctattcaacaat |
10046821 |
T |
|
| Q |
141 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
240 |
Q |
| |
|
||| || |||||| | |||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| | |
|
|
| T |
10046820 |
tctggccggaaatgcttttttacttccagcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccga |
10046721 |
T |
|
| Q |
241 |
ggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgat |
340 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |
|
|
| T |
10046720 |
ggtttgaggtcatgataatgactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaa |
10046621 |
T |
|
| Q |
341 |
tacagaaatatgtgctttctccacttcttcgaaaagta |
378 |
Q |
| |
|
|||||| ||||||||||||| ||||| || ||||||| |
|
|
| T |
10046620 |
tacagatgtatgtgctttctctacttcatcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 38708525 - 38708308
Alignment:
| Q |
41 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
140 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||||| || ||||| ||| ||| ||||| ||||||| ||| ||||||| |
|
|
| T |
38708525 |
acgactagctacatccttcattttcaaccttgcaaccttcctcaattactcatgagatagatgatcaaatacaacaacttcatccagcgaattcaacaat |
38708426 |
T |
|
| Q |
141 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
240 |
Q |
| |
|
||| | |||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||| |
|
|
| T |
38708425 |
tctggtctgaaatgtttttttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaa |
38708326 |
T |
|
| Q |
241 |
ggttcgaggtcatgataa |
258 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
38708325 |
ggtttgaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 313
Target Start/End: Complemental strand, 45468581 - 45468309
Alignment:
| Q |
41 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
140 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||| |||||||||| || || ||||||| ||||| ||||||| | || || ||||||| |
|
|
| T |
45468581 |
acgactagccacatccttcatttgcaaccttgcaacctttctcaattgctcatgtgatagaggatcaaatacaacaacttcgtccagtcggttcaacaat |
45468482 |
T |
|
| Q |
141 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
240 |
Q |
| |
|
||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
45468481 |
tctggcctgaaatgccttcttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaa |
45468382 |
T |
|
| Q |
241 |
ggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
313 |
Q |
| |
|
|||| ||||||||||| | || ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
45468381 |
ggttagaggtcatgatgatcacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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