View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_18 (Length: 396)
Name: NF21266_low_18
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 250855 - 250485
Alignment:
| Q |
11 |
cataggtgtaaaaatgaacacatttaattttcttgttctcattgggggtacccttttagtctctttacaaatttcttttttcaagtttgattggagtata |
110 |
Q |
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| T |
250855 |
cataggtgtaaaaatgaacacatttaattttcttgttctcattgggggtacccttttagtctctttacaaatttcttttttcaagtttgattggagtata |
250756 |
T |
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| Q |
111 |
acttgattttgcaaaccaagaattcatttctgacggggtaatttactggtcctatgatgtaactattcattgacttcatttcaatgcgtgcatttagtga |
210 |
Q |
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| T |
250755 |
acttgattttgcaaaccaagaattcatttctgacggggtaatttactggtcctatgatgtaactattcattgacttcatttcaatgcgtgcatttagtga |
250656 |
T |
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| Q |
211 |
taaatgatactaataaacagatggaattttcgcccttgataatgatagaaatagttaaaaccagttgatacaaactctgttttcgacgacaactactaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
250655 |
taaatgatactaataaacagatggaattttcgcccttgataatgatagaaatagttaaaaccagttgatacaaactctgttttcgacgaaaactactaat |
250556 |
T |
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| Q |
311 |
aatcatgcctcaaggataatcagttattaacatgaattcttccgagaattgaaggttgaaccctcaagaat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
250555 |
aatcatgcctcaaggataatcagttattaacatgaattcttccgagaattaaaggttgaaccctcaagaat |
250485 |
T |
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