View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21266_low_20 (Length: 352)

Name: NF21266_low_20
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21266_low_20
NF21266_low_20
[»] chr1 (8 HSPs)
chr1 (17-343)||(24352594-24352920)
chr1 (17-343)||(24340229-24340555)
chr1 (193-327)||(24367144-24367278)
chr1 (255-319)||(24415834-24415898)
chr1 (125-238)||(24310097-24310213)
chr1 (192-242)||(24369476-24369526)
chr1 (265-322)||(24322835-24322892)
chr1 (260-327)||(24310265-24310332)
[»] scaffold0508 (1 HSPs)
scaffold0508 (17-125)||(12122-12230)
[»] chr5 (4 HSPs)
chr5 (193-240)||(29696203-29696250)
chr5 (193-245)||(179031-179083)
chr5 (263-298)||(29712421-29712456)
chr5 (193-239)||(29712504-29712550)
[»] chr4 (25 HSPs)
chr4 (254-330)||(49041081-49041157)
chr4 (193-240)||(48147754-48147801)
chr4 (43-104)||(45366400-45366461)
chr4 (193-240)||(48735419-48735466)
chr4 (50-104)||(45372251-45372305)
chr4 (193-242)||(45372107-45372156)
chr4 (189-246)||(48902925-48902982)
chr4 (193-242)||(49041199-49041248)
chr4 (196-240)||(7908325-7908369)
chr4 (194-237)||(7237763-7237806)
chr4 (194-237)||(7771396-7771439)
chr4 (194-237)||(7790081-7790124)
chr4 (193-240)||(45384905-45384952)
chr4 (193-240)||(50250818-50250865)
chr4 (194-240)||(7877727-7877773)
chr4 (194-240)||(48705396-48705442)
chr4 (54-104)||(49044378-49044428)
chr4 (193-242)||(48170597-48170646)
chr4 (193-238)||(48852663-48852708)
chr4 (193-238)||(48870539-48870584)
chr4 (193-238)||(48875843-48875888)
chr4 (193-238)||(48886225-48886270)
chr4 (193-238)||(48898701-48898746)
chr4 (127-171)||(45366327-45366371)
chr4 (193-237)||(49048613-49048657)
[»] chr3 (4 HSPs)
chr3 (193-242)||(11005988-11006037)
chr3 (193-242)||(11024563-11024612)
chr3 (189-238)||(47451946-47451995)
chr3 (193-242)||(11015551-11015600)
[»] chr8 (3 HSPs)
chr8 (193-240)||(4031938-4031985)
chr8 (193-238)||(12200304-12200349)
chr8 (193-238)||(12444732-12444777)
[»] chr6 (1 HSPs)
chr6 (193-237)||(21979678-21979722)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 24352594 - 24352920
Alignment:
Q  17 ctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgcaaattcgttcaaa 116  Q
    |||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||  |||||||||| ||||||||  | | || | | ||||| |    
T  24352594 ctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgttcacacttgttcaga 24352693  T
Q  117 agcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttgggtatgacgagtca 216  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||    
T  24352694 agcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttgggtatgacgaatca 24352793  T
Q  217 acagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgc 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24352794 acatatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgc 24352893  T
Q  317 ctttttgtagtaagtcctcttcctttg 343  Q
    |||||||||||||||||||| ||||||    
T  24352894 ctttttgtagtaagtcctctccctttg 24352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 24340229 - 24340555
Alignment:
Q  17 ctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgcaaattcgttcaaa 116  Q
    |||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||  |||||||||| ||||||||  | | || | | ||||| |    
T  24340229 ctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgttcacacttgttcaga 24340328  T
Q  117 agcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttgggtatgacgagtca 216  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||    
T  24340329 agcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttgggtatgacgaatca 24340428  T
Q  217 acagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgc 316  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340429 acatatgattacttggtggtttcagtttaatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgc 24340528  T
Q  317 ctttttgtagtaagtcctcttcctttg 343  Q
    |||||||||||||||||||| ||||||    
T  24340529 ctttttgtagtaagtcctctccctttg 24340555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 24367144 - 24367278
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacg 292  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  | || |||| ||||||||||||||||||||||||||||||||||||||| |    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgattacttggggattttctcattgagagctaatgcgtggaatg 24367243  T
Q  293 aaattgtgagccctacccatttgcctttttgtagt 327  Q
    ||| |||| |  ||||||||||| |||||||||||    
T  24367244 aaactgtgggtactacccatttggctttttgtagt 24367278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 24415834 - 24415898
Alignment:
Q  255 cttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctt 319  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24415834 cttgaggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt 24415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 24310097 - 24310213
Alignment:
Q  125 tatggaatccatccaccggattttatagaaaaatacctttccctcct---agtgtttcacatttagttttttatggttttgggtatgacgagtcaacaga 221  Q
    |||||||||||||||||||| || ||||| |||||||||  ||||||   | |  ||||| ||||  ||| ||||||||||| ||||||||||||| |||    
T  24310097 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 24310196  T
Q  222 tgattacttggtggttt 238  Q
    |||||||||||| ||||    
T  24310197 tgattacttggtagttt 24310213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 24369476 - 24369526
Alignment:
Q  192 ttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24369476 ttatggttttggctatgacgagtcaacagatgattacctggtggtttcagt 24369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 24322835 - 24322892
Alignment:
Q  265 ttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt 322  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  24322835 ttctctttgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttt 24322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 24310265 - 24310332
Alignment:
Q  260 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagt 327  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| ||||    
T  24310265 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagt 24310332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 12122 - 12230
Alignment:
Q  17 ctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgcaaattcgttcaaa 116  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| | | |||||||    
T  12122 ctgttccgctgaaccctagttttccacttccggaatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgcacacttgttcaaa 12221  T
Q  117 agcttatat 125  Q
     ||||||||    
T  12222 ggcttatat 12230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 29696203 - 29696250
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttca 29696250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 179031 - 179083
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttc 245  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||    
T  179031 tatggttttgggtatgaggagtcaacagatgattacttgttggtgtcaatttc 179083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 29712456 - 29712421
Alignment:
Q  263 ttttctcattgagagctaatgcgtggaacgaaattg 298  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29712456 ttttctcattgagagctgatgcgtggaacgaaattg 29712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 29712550 - 29712504
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttc 239  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||    
T  29712550 tatggttttgggtatgacgagtcaagggatgattacttcgtgctttc 29712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 49041157 - 49041081
Alignment:
Q  254 acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaag 330  Q
    |||||| |||||||||||||| |||||||| |||||| ||||||||| |  ||| ||||| ||||||||||||||||    
T  49041157 acttggagattttctcattgaaagctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaag 49041081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 48147801 - 48147754
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttca 48147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 45366461 - 45366400
Alignment:
Q  43 cttccggaatcttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgca 104  Q
    ||||| |||||||||| |||||||||||||||| ||||||||||| | |||||| |||||||    
T  45366461 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 48735466 - 48735419
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 45372305 - 45372251
Alignment:
Q  50 aatcttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgca 104  Q
    ||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 45372156 - 45372107
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||||||||    
T  45372156 tatggatttgggtatgatgagttaagagatgattacttggtggtttcagt 45372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 48902925 - 48902982
Alignment:
Q  189 tttttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttca 246  Q
    |||||||||||||||||||||| | |||| ||||||||||||| |||| ||| |||||    
T  48902925 tttttatggttttgggtatgaccactcaagagatgattacttgatggtatcaatttca 48902982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 49041248 - 49041199
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagt 49041199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 7908325 - 7908369
Alignment:
Q  196 ggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttca 7908369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  194 atggttttgggtatgacgagtcaacagatgattacttggtggtt 237  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  194 atggttttgggtatgacgagtcaacagatgattacttggtggtt 237  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  194 atggttttgggtatgacgagtcaacagatgattacttggtggtt 237  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 45384952 - 45384905
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 7877727 - 7877773
Alignment:
Q  194 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttca 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 48705442 - 48705396
Alignment:
Q  194 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 49044428 - 49044378
Alignment:
Q  54 ttattttgatcttcaaattaaatgttcatgtagaaggtttataattttgca 104  Q
    ||||||| || |||||| |||||||||||||||| |||||||| |||||||    
T  49044428 ttatttttatattcaaactaaatgttcatgtagagggtttatatttttgca 49044378  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 48170646 - 48170597
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||||||||  ||| || |||||||||||| |||||||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagt 48170597  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttt 48852708  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    |||||||||||||||||  ||| | |||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggttt 48875888  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 48898701 - 48898746
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48898746  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 45366371 - 45366327
Alignment:
Q  127 tggaatccatccaccggattttatagaaaaatacctttccctcct 171  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||    
T  45366371 tggaatccatccactggatttcataaaaaaatacctttgcctcct 45366327  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 237  Q
    ||||||||||||||||||   |||||||||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 11006037 - 11005988
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11005988  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 11024612 - 11024563
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11024563  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 47451995 - 47451946
Alignment:
Q  189 tttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    ||||||| | |||||||||||||||| ||||||||||||||| |||||||    
T  47451995 tttttattggtttgggtatgacgagttaacagatgattacttagtggttt 47451946  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 11015600 - 11015551
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 242  Q
    |||||||||||||||||| | | || |||||||||||||||||| |||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagt 11015551  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 4031985 - 4031938
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 240  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  4031985 tatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 12200304 - 12200349
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 12444732 - 12444777
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 238  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q  193 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 237  Q
    ||||||||||| |||||| |||||| | |||||||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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