View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_22 (Length: 339)
Name: NF21266_low_22
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 14686779 - 14686453
Alignment:
| Q |
1 |
ccaataaaaaatgaatgttatagagagtgtttagcctataatgttcttaaaattctttgccagtttagttggataggttaaaaatgtctaccatccgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
14686779 |
ccaataaaaaatgaatgttatagagagtgtttagccgataatgtttttaaaattctttgctagtttagttggataggttaaaaatgtctaccatctgtga |
14686680 |
T |
|
| Q |
101 |
taatatcatcttnnnnnnnnnnnnnnnnnnnnnttagagggcttgatgataacgtgttacatgaatcctctcttcggctgcatcttactctcatcagctg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14686679 |
taatatcatcttaaaaaaagaaaaaaaaa----ttagagggcttgatgataacgtgttacatgaatcctctcttcggctgcatcttactctcatcagcta |
14686584 |
T |
|
| Q |
201 |
ccgcttcaaaaccaagatagataataggccatgtactaacccgtttccaaagattcactttgtttgtttcttccacattacttcaaatatcacttattca |
300 |
Q |
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|| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14686583 |
ccacttcaaaaccaagatagataataggccttgcactaacccgtttccaaagattcactttgtttgtttcttccacattacttcaaatatcacttattca |
14686484 |
T |
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| Q |
301 |
ttggatctgattccactttcctcttcatctc |
331 |
Q |
| |
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|||||||||||||||||||||||||| |||| |
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| T |
14686483 |
ttggatctgattccactttcctcttcttctc |
14686453 |
T |
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