View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21266_low_23 (Length: 339)
Name: NF21266_low_23
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 23315634 - 23315572
Alignment:
| Q |
124 |
aaagagcacttatacgtagacacacttacgtgtctgtacacccttctaccacttcccagtggc |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23315634 |
aaagagcacttatacgtagacacacttacgtgtctgtacacccttctaccactctccagtggc |
23315572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 7056709 - 7056789
Alignment:
| Q |
43 |
gagcatcgcagcttatttatatgggac----atagtgtgatgttgttctctttc--aaaagaagaaatctatatgcataca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7056709 |
gagcatcgcagcttatttatatgggacatatatagtgtgatgttgttctctttcaaaaaagaagaaatctatatgcataca |
7056789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 23315499 - 23315456
Alignment:
| Q |
259 |
cacttgttccgtttctcttcttcaatcccttccacaagccgcca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23315499 |
cacttgttccgtttctcttcttcaatcccttccacaagccgcca |
23315456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 50446850 - 50446798
Alignment:
| Q |
124 |
aaagagcacttatacgtagacacacttacgtgtctgtacacccttctaccact |
176 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
50446850 |
aaagagcacttataggtaaacacacttacgtgtctgtacacctttctaccact |
50446798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 39208204 - 39208253
Alignment:
| Q |
127 |
gagcacttatacgtagacacacttacgtgtctgtacacccttctaccact |
176 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39208204 |
gagcacttataggtaaacacacttacgtgtctgtacacctttctaccact |
39208253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 39208280 - 39208333
Alignment:
| Q |
123 |
aaaagagcacttatacgtagacacacttacgtgtctgtacacccttctaccact |
176 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
39208280 |
aaaagagcacttataggtaaacacacttacgtgtctgtacacatttctaccact |
39208333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 50446771 - 50446718
Alignment:
| Q |
123 |
aaaagagcacttatacgtagacacacttacgtgtctgtacacccttctaccact |
176 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
50446771 |
aaaagagcacttataggtaaacacacttacgtgtctgtacacatttctaccact |
50446718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 17713235 - 17713174
Alignment:
| Q |
125 |
aagagcacttatacgtagacacacttacgtgtctgtacacccttctaccacttcccagtggc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17713235 |
aagagcacttatacgtagacacacttacgtgtctgtacacccttctaccactgtccagtggc |
17713174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 19014464 - 19014403
Alignment:
| Q |
125 |
aagagcacttatacgtagacacacttacgtgtctgtacacccttctaccacttcccagtggc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19014464 |
aagagcacttatacgtagacacacttacgtgtctgtacacccttctaccactgtccagtggc |
19014403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 17713099 - 17713054
Alignment:
| Q |
259 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17713099 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccacc |
17713054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 19014328 - 19014283
Alignment:
| Q |
259 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19014328 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccacc |
19014283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University