View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21266_low_25 (Length: 336)
Name: NF21266_low_25
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 6381365 - 6381048
Alignment:
| Q |
1 |
aatggaattgaaaacatgaaaacagagagacatgtaattttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaa |
99 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6381365 |
aatggaattgaaaacatgaaaa--gagagacatgtaattttatccaatcaaagaattaaatgtcgaacttgttctctatccgctttatccttaagaacaa |
6381268 |
T |
|
| Q |
100 |
caaacatgtccttaaaagtaagcttatcaacaaaagaacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaat |
199 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
6381267 |
caaacatgtcattaaaagtaagcttatcaacaaaagaacccataaccaagttcatatgattaaccccatcaaccttctcagcatgagcacaaaccttaat |
6381168 |
T |
|
| Q |
200 |
tgcagcaatcacatgttttccatctgagaataggaacgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgt |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6381167 |
tgcagcaatcacatgttttccatctgagaataggaatgagtgttgcttcgtgggatgggttgtaactgtgaatggggataatggggttcttcttctttgt |
6381068 |
T |
|
| Q |
300 |
gtttattttgtggggtagca |
319 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
6381067 |
gtttattttgtggggtagca |
6381048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 29148682 - 29148363
Alignment:
| Q |
1 |
aatggaattgaaaacatgaaaacagagagacatgtaattttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaa |
99 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||| ||| ||||||| |||||||| ||||||||||||||||||| |
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|
| T |
29148682 |
aatggaattgaaaacatgaaaagagatagacatgtaattttatccaatcaaagaattaaatgttgaacttgatctctatctgctttatccttaagaacaa |
29148583 |
T |
|
| Q |
100 |
caaacatgtccttaaaagtaagcttatcaacaaaagaacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29148582 |
caaacatgtccttaaaagtaagcttatcaacaaaagaacccataatcaagttcatatgattaaccccatcaaccttctcagcaagagcacaaaccttaat |
29148483 |
T |
|
| Q |
200 |
tgcagcaatcacatgttttccatctgagaataggaacgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgt |
299 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
29148482 |
tgcaccaatcacatgttttccatctgagaataggaacgattgttgcttcgtgggaggggctgtaattgtgaatggggataatggggttcttcttctttat |
29148383 |
T |
|
| Q |
300 |
gtttattttgtggggtagca |
319 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29148382 |
gtttattttgtggggtagca |
29148363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 46187665 - 46187350
Alignment:
| Q |
5 |
gaattgaaaacatgaaaacagagagacatgtaattttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaacaaa |
103 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||| |||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
46187665 |
gaattgaaaacatgaaaagagagaggcatgtgattttatccaatcaaagaattaaatgtcgaacttgttctctttcttctttatccttaagaacaacaaa |
46187566 |
T |
|
| Q |
104 |
catgtccttaaaagtaagcttatcaacaaaagaacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaattgca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
46187565 |
catgtccttaaaagtaagcttatcaacaaaagaacccataaccaagctcatatgattaaccccatcaagcttctcagcaagagcacaaaccttaattgca |
46187466 |
T |
|
| Q |
204 |
gcaatcacatgttttccatctgagaataggaacgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgtgttt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
46187465 |
gcaatcacatgttttccatctgagaataggaacgagtgttgcttcgtgggaggggctgtaactgtgaattgggataatggggttcttcttctttgtgttt |
46187366 |
T |
|
| Q |
304 |
attttgtggggtagca |
319 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
46187365 |
attttgcggggtagca |
46187350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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