View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_31 (Length: 314)
Name: NF21266_low_31
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 37978845 - 37978567
Alignment:
| Q |
21 |
gtggtgacatatgtttaaaccatcgatataattaatttgtggtgactgctaatatgtgagtttaaaagattggacaatcacagtgaagttaaaaaataac |
120 |
Q |
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| T |
37978845 |
gtggtgacatgtgtttaaaccatcgatataattaatttgtggtgactgctaatatgtgagtttaaaagattggacaatcacagtgaagttaaaaaataac |
37978746 |
T |
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| Q |
121 |
cattgatctaataataaaataatacaatggtcaatggttatattttttgaaacggagccattgtactagactattcatattaaatcttgaccattttatt |
220 |
Q |
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| T |
37978745 |
cattgatctaataataaaataatacaatggtcaatggttatattttttgaaacggcgccattgtactagactattcatattaaatcttgaccattttatt |
37978646 |
T |
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| Q |
221 |
tatttagtcaatgtttagattttaacttcactatgatgatccaatcttttagcttcactttgctaactgtcactttaat |
299 |
Q |
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| T |
37978645 |
tatttagtcaatgtttatattttaacttcactatgatgatccaatcttttagcttcactttgctaactgtcactttaat |
37978567 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 36849858 - 36849913
Alignment:
| Q |
82 |
ttaaaagattggacaatcacagtgaagttaaaaaataaccattgatctaataataa |
137 |
Q |
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| T |
36849858 |
ttaaaagattggactatcatggagaagttaataaataaccattgatttaataataa |
36849913 |
T |
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