View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_38 (Length: 285)
Name: NF21266_low_38
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27499059 - 27499124
Alignment:
| Q |
1 |
caaagggttcagaaggtttaaactctagaaattaacatcattgctaatttacaaacatttgtctgc |
66 |
Q |
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| T |
27499059 |
caaaaggttcagaaggtttaaactctagaaattaacatcattgctaatttacaaacatttgtctgc |
27499124 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 27499263 - 27499325
Alignment:
| Q |
205 |
gtatattggtttgctagtatatagtaatatataacagctagagggtgcatgcatgatcatacc |
267 |
Q |
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| T |
27499263 |
gtatattggttggctagtaaatagtaatatagaacagctagagggtgcatgcatgatcatacc |
27499325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 27520420 - 27520476
Alignment:
| Q |
211 |
tggtttgctagtatatagtaatatataacagctagagggtgcatgcatgatcatacc |
267 |
Q |
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| T |
27520420 |
tggttggctagtatatagtaatatataacagctagagggtgcatgcttgatcatacc |
27520476 |
T |
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