View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_39 (Length: 273)
Name: NF21266_low_39
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 11296702 - 11296958
Alignment:
| Q |
1 |
ctgatgtgcacatgacagaaaaccaatgttttnnnnnnncagttcgcaactgcaattatgaccgcaacatcaaggtttttcatgccttcttactatatca |
100 |
Q |
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| T |
11296702 |
ctgatgtgcacatgacagaaaaccaatgttttaaaaaaacagttcgcaactgcaattatgaccgcaacatcaaggtttttcatgccttcttactatatca |
11296801 |
T |
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| Q |
101 |
cagggccgcattattcgtatttgaccacaattttctgcagtatacgatcttgacccggctgcgatttaaaatcttgacagaaacaatatatcctaccctt |
200 |
Q |
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| T |
11296802 |
cagggccgcattattcgtatttgaccacaattttctgcagtatacgatcttgacccggctgtgatttaaaatcttgacagaaacaataaatcctaccctt |
11296901 |
T |
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| Q |
201 |
ttaatgtattagggtctattttgattgacttatttaagcttatctaggggcaaaaac |
257 |
Q |
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| T |
11296902 |
ttaatgtattagggtctattttgattgacttatttaagcttatctaggggcaaaaac |
11296958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 11297024 - 11297155
Alignment:
| Q |
126 |
cacaattttctgcagtatacgatcttgacccggctgcgatttaaaatcttgacagaaacaatatatcctacccttttaatgtattagggtctattttgat |
225 |
Q |
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| T |
11297024 |
cacaattttctgtagtatacaatcttgacacatgcgcaatttaaaaccttgtcaaaaacaataaactctaccatcttaaagtattagagtctgtttgaat |
11297123 |
T |
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| Q |
226 |
tgacttatttaagcttatctaggggcaaaaac |
257 |
Q |
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| T |
11297124 |
tgacttatttaagcttatctagtggcataaac |
11297155 |
T |
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