View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_43 (Length: 259)
Name: NF21266_low_43
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 3390183 - 3389943
Alignment:
| Q |
2 |
aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca |
101 |
Q |
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| T |
3390183 |
aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccactttccca |
3390084 |
T |
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| Q |
102 |
agattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390083 |
agattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttc |
3389984 |
T |
|
| Q |
202 |
cacaaggagatgctataatgattaaggttggtggtatacat |
242 |
Q |
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| T |
3389983 |
cacaaggagatgctataatgattaaggttggtggtatacat |
3389943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 3403002 - 3402908
Alignment:
| Q |
138 |
tgaaatattgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt |
233 |
Q |
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||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3403002 |
tgaaaaattgtaaaattttatc-agggatcgaacatgttggaggaaatatgtttgaatgtgtgccacaaggagatgctataatgcttaaggttggt |
3402908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 3403466 - 3403358
Alignment:
| Q |
2 |
aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca |
101 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||| ||||| ||| |||||||||||| ||||||| ||| |
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| T |
3403466 |
aatcaattttgatctcccacaagtgattgaacatgcaccaccctctccaggtaaatgcttgatcgcatctgaaagtttatatttagttgccactttccca |
3403367 |
T |
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| Q |
102 |
agattattt |
110 |
Q |
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|||| |||| |
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| T |
3403366 |
agataattt |
3403358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 3369724 - 3369627
Alignment:
| Q |
138 |
tgaaatattgtcaaatt--ttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt |
233 |
Q |
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||||| ||||||||||| || |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
3369724 |
tgaaaaattgtcaaattctttttttagggatcgagtattttggaggaaatatgtttgaatctgttccacaaggagatgctataatgcttaaggttggt |
3369627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 3298789 - 3298700
Alignment:
| Q |
144 |
attgtcaaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggttggt |
233 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||| ||||| ||||||||||| |
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| T |
3298789 |
attgccaaattttatttagggattgaacatgttggaggaagtatgtttgagagtattccacaaggagatgccataatacttaaggttggt |
3298700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 3360198 - 3360118
Alignment:
| Q |
149 |
caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggt |
229 |
Q |
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||||||| ||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
3360198 |
caaatttcatttaggcattgaatatgttggaggaaatatgtttgaaagtgttccacaaggagatgtcataatgattaaggt |
3360118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 3348375 - 3348294
Alignment:
| Q |
149 |
caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgctataatgattaaggtt |
230 |
Q |
| |
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||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
3348375 |
caaatttcatttagggattgagcatgttggaggaagcatgtttgaaagtgttccacaaggagatgccataatgcttaaggtt |
3348294 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 3369838 - 3369730
Alignment:
| Q |
2 |
aatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattttatatttagtgaccacttttcca |
101 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |||||||||||| || ||| || |||||| ||||| ||||||| |||||||| |||||||| || |
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| T |
3369838 |
aatcaactttgacctcccacaagtgattgaaaatgcaccaccctatcatggtaatcgtttgatagcatcttaaattttgtatttagtaaccactttctca |
3369739 |
T |
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| Q |
102 |
agattattt |
110 |
Q |
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||||||||| |
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| T |
3369738 |
agattattt |
3369730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 23994017 - 23994082
Alignment:
| Q |
149 |
caaattttatttagggatcgaacatgttggaggaaatatgtttgaatgtgttccacaaggagatgc |
214 |
Q |
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||||||| | ||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
23994017 |
caaatttcaattagggatccaacatattggaggaagcatgtttgaaagtgttccacaaggagatgc |
23994082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 20720409 - 20720368
Alignment:
| Q |
2 |
aatcaattttgatctcccacaagtgattgaacatgcaccacc |
43 |
Q |
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|||||||||||| || ||||||||||||||| |||||||||| |
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| T |
20720409 |
aatcaattttgacctaccacaagtgattgaaaatgcaccacc |
20720368 |
T |
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