View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_49 (Length: 245)
Name: NF21266_low_49
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 2672592 - 2672805
Alignment:
| Q |
13 |
taatactactaatgcatgcatttagctatatatagttcatcacgtgttactttaaggtgttaatatatgttgttaatttcagtgaggcagaatgggactc |
112 |
Q |
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| T |
2672592 |
taatactactaatgcatgcatttagctatatatagttcatcacgtgttactttgaggtgttaatatatgttgttaatttcaatgaggcagaatggaactc |
2672691 |
T |
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| Q |
113 |
cttaacttgaaagggacattaggatcatcatccatgattttaaggaaagttgagtcaaaccgaagggaaggtgcatattttaaattatcttctctatata |
212 |
Q |
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| T |
2672692 |
cttaacttgaaagggacattaggatcatcatccatggttttaaggaaagttgagtcaaaccgaagggaaggtgcatattttaaattatcttctctatata |
2672791 |
T |
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| Q |
213 |
tatgtagtggttca |
226 |
Q |
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|||||||||||||| |
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| T |
2672792 |
tatgtagtggttca |
2672805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 2690849 - 2690992
Alignment:
| Q |
72 |
ttaatatatgttgttaatttcagtgaggcagaatgggactccttaacttgaaagggacattaggatcatcatccatgattttaaggaaagttgagtcaaa |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
2690849 |
ttaatatatgttgttaatttcagtgaggcagaatgggactccttagtatgaaagggacattaggatcatcatccatggttttagggaaagttgagtcaaa |
2690948 |
T |
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| Q |
172 |
ccgaagg---gaaggtgcatattttaaattatcttctctatata |
212 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
2690949 |
ccgaagggaagaagatgcatattttaaattatcttccctatata |
2690992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 2690454 - 2690505
Alignment:
| Q |
14 |
aatactactaatgcatgcatttagc----tatatatagttcatcacgtgtta |
61 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2690454 |
aataatactaatgcatgcatttagctagctatatatagttcatcacgtgtta |
2690505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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