View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_5 (Length: 544)
Name: NF21266_low_5
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 24 - 538
Target Start/End: Original strand, 50372414 - 50372924
Alignment:
| Q |
24 |
agctagtcctagtttattttggttcaattacagagacgacggtaactataattaccgtacctacactttctgttgttattcccttttcactaagaattca |
123 |
Q |
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| T |
50372414 |
agctagtcctagtttattttggttcaattacagagacgacggtaactatgattaccgtacctacactttctgttgttattcccttttcactaagaattca |
50372513 |
T |
|
| Q |
124 |
gaatgctttcctttgttcctcttacatttccttcaatttccattgcactgtaatttttatgaaccaaaactttgaccttccaaattcctgcaaatataac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372514 |
gaatgctttcctttgttcctcttacatttccttcaatttcctttgcactgtaatttttatgaaccaaaactttgaccttccaaattcctgcaaatataac |
50372613 |
T |
|
| Q |
224 |
caatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataaagaaaaatgataataatagaatagaaagcaggaactataacaagagg |
323 |
Q |
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| T |
50372614 |
caatatcaactgagctaaggaagaaacagagcattcaaattgaattagaat-aagaaaaatgataataatagaatagaaagcgggaactataacaagagg |
50372712 |
T |
|
| Q |
324 |
aaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtgcttaaaattcaaatattatta |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50372713 |
aaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtgcttaaaattcaaa---tatta |
50372809 |
T |
|
| Q |
424 |
aattagcctagtgcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtc |
523 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372810 |
aattagcctagagcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtc |
50372909 |
T |
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| Q |
524 |
aatgacctttgatac |
538 |
Q |
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||||||||||||||| |
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| T |
50372910 |
aatgacctttgatac |
50372924 |
T |
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