View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_54 (Length: 238)
Name: NF21266_low_54
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31823741 - 31823520
Alignment:
| Q |
1 |
tttcctgctccatccatattaagcaaaacctatattccttcaggtggtctccatttgatatgcaccaatatatttggaagcgcaattaaaatattatctt |
100 |
Q |
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| T |
31823741 |
tttcctgctccatccatattaagcacaacttatattccttcaggtggtctccatttgatatgcaccaatatatttggaagcgcaattacaatattatctt |
31823642 |
T |
|
| Q |
101 |
aatagctaagccatagtcattggcatatctagc-aatatccatcgtggtcgcatgggtctttggtaattttattcatgaacttccatattttggcacttc |
199 |
Q |
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| T |
31823641 |
aacagctaagccatagtcattggcatatctagcaaatatccatcgtggtcgcatgggtctttggtaattttattcatgaacttccatattttggcagttc |
31823542 |
T |
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| Q |
200 |
aacaaggaatgacgaacactag |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
31823541 |
aacaaggaatgacgaacactag |
31823520 |
T |
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Back To:
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 40935451 - 40935538
Alignment:
| Q |
104 |
agctaagccatagtcattggcatatctagcaatatccatc-gtggtcgcatgggtctttggtaattttattcatgaacttccatattt |
190 |
Q |
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||||||||||||||| | |||||||||||||| ||||| |||||||||||||||| | ||||||| ||||||||||||| ||||| |
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| T |
40935451 |
agctaagccatagtctctagcatatctagcaatttccatatgtggtcgcatgggtctcagctaattttcttcatgaacttccttattt |
40935538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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