View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_58 (Length: 233)
Name: NF21266_low_58
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 56313076 - 56313275
Alignment:
| Q |
1 |
cagtgcctaaaatatattcatacaacaactatcaccgtttgtgattaatnnnnnnnnnnnnnnnnnncttttctcgcatacatacatacacatgtactat |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
56313076 |
cagtacctaaaatatattcatacaacaactatcaccgtttgtgattaattctctctctctctctc--cttctctcgcatacatacatacacatgtactat |
56313173 |
T |
|
| Q |
101 |
ttcatgcatgaagttttaaattctgaccacaaattaattaattcctttcatctctcgtgatcattctgatggtgcagtgcaggtagactactgtacgttt |
200 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
56313174 |
ttcatgcatgaattttaaaattctgaccacaaattaattaattcctttcatctctcgtgatcattctgatggcgcagtgcaggtagactactgtacgttt |
56313273 |
T |
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