View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_7 (Length: 522)
Name: NF21266_low_7
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_7 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 7501644 - 7502024
Alignment:
| Q |
11 |
aatatcaaagttgctaaaccatgttggatttcgtaccgtctaccctaaattcggatacagtgtggcagtatagtgccaatataacggatatttaacaatt |
110 |
Q |
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| T |
7501644 |
aatatcaaagttgctaaaccatgttggatttcgtatcgtctaccctaaattccgatacggtatggcagtatagtgccaatataacggatatttaacaatt |
7501743 |
T |
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| Q |
111 |
aacactcattagtcataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttccta |
210 |
Q |
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| T |
7501744 |
aacactcattagtcataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctg |
7501843 |
T |
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| Q |
211 |
caaaagtttgctgtagtgttctacaagtcatatcaattactggccatttcaaatgatgaaactaatttttaaacaaggaaattttcatgtgttgttctat |
310 |
Q |
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| T |
7501844 |
caaaagtttgttgtagtgttctacaagtcatatcaattactggacatttcaaaagatgaaactaatttttaaacaaggaaactttcatgtgttgttctat |
7501943 |
T |
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| Q |
311 |
gatgaaaaaccatataatgcacaaccctgaggcttggtctaccccttaaaagaatgacctttatcatactaacatgaagct |
391 |
Q |
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| T |
7501944 |
gatgaaaaaccatataatgcaccaccctgaggcttggtctgccccttaaaagaatgacctttaacatactaacatgaagct |
7502024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 507
Target Start/End: Original strand, 7502060 - 7502139
Alignment:
| Q |
428 |
tcagaactgcatgaagaaaccaagaaaaagggaactctttagtttaccaannnnnnnnccatgacactagacgtcacttt |
507 |
Q |
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| T |
7502060 |
tcagaactgcatgaagaaaccaagaaaaagggaactctttagtttaccaattttttttccatgacactagacgtcacttt |
7502139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 7498736 - 7498830
Alignment:
| Q |
124 |
cataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctacaaaagttt |
219 |
Q |
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| T |
7498736 |
cataaaactcaaccaagttgtatcatttagaaaataccagaaattgtatcattcttcatcgatatttcaattact-ggagtttcctacaaaagttt |
7498830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 13450 - 13408
Alignment:
| Q |
117 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
159 |
Q |
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| T |
13450 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
13408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 33280803 - 33280845
Alignment:
| Q |
117 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
159 |
Q |
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| T |
33280803 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
33280845 |
T |
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